Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30654
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...    59   7e-10
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    34   0.029
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259...    27   4.3  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 25/64 (39%), Positives = 44/64 (68%)
 Frame = +1

Query: 4   WFGFYAPGQAEKLVSLRESKIYLQDRLGLKKMDKAGKLIFLSTPGDHLRFTEEWMIKNII 183
           WFG+Y  G  + ++  +++K+Y++D +GLK +D  G++ F+S PG HL  ++  M+K I+
Sbjct: 251 WFGYYPDGGFDPVLPPQKTKLYMEDWIGLKTLDDEGRVKFVSVPGGHLGISKTDMMKYIV 310

Query: 184 KPYL 195
            PYL
Sbjct: 311 -PYL 313


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 33.9 bits (74), Expect = 0.029
 Identities = 12/27 (44%), Positives = 22/27 (81%)
 Frame = +1

Query: 58  SKIYLQDRLGLKKMDKAGKLIFLSTPG 138
           +K+Y +D +GLK +++AG++ F+S PG
Sbjct: 200 TKLYTEDWIGLKALEEAGRVKFVSVPG 226


>03_06_0153 -
           32024787-32024892,32024997-32025079,32025159-32025978,
           32026122-32026327,32026887-32026975,32027132-32027192,
           32027297-32027416
          Length = 494

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 170 IIHSSVKRRWSPGVDKKINFPALSIFLRP 84
           ++HSS +++   G D ++ FP+LS +L+P
Sbjct: 342 LVHSS-RKKVLKGNDSEVEFPSLSQWLKP 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,060,520
Number of Sequences: 37544
Number of extensions: 117601
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)