Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30653
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   0.82 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   1.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   1.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   3.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    24   7.6  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 106 VYNTYLMPI*ESIFHNAEKVDDLSKTIAF 20
           +YN++++PI +S F+  E  D  ++T+ F
Sbjct: 431 LYNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 55   QHCGILILK*ALDKCYKPTVEKLIQNVL 138
            +HCGI I++  L   Y P  ++L+Q V+
Sbjct: 1056 EHCGIRIIEAELFHGYNPEKKELLQEVV 1083


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 196 QKMPPLS*YIHTLNCLMSILKHF 128
           +K PPL  Y ++ NCL  I KHF
Sbjct: 871 EKKPPL--YSYSKNCLECIQKHF 891


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 15  HSNAIVFDRSSTFSALWN 68
           H    VFD++S F++LWN
Sbjct: 457 HCLQSVFDKNSDFASLWN 474


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 256 KLVSKIGHD*QFFLENTLHFQKMP 185
           KL S +    Q  LEN LHF   P
Sbjct: 611 KLASALASQDQLVLENALHFVNPP 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,400
Number of Sequences: 5004
Number of extensions: 21639
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)