Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30653
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    26   9.1  
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139...    26   9.1  

>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 KEAFFENVKYFLEKIVSHVQFCLQVF 258
           KEAF  ++KY +  +  H + CL +F
Sbjct: 405 KEAFLYSLKYSIPLVAYHEEQCLTLF 430


>01_06_1745 -
           39609894-39610030,39610127-39610223,39613856-39613996,
           39614094-39614272,39615067-39615111,39615802-39615858,
           39615935-39616163,39616348-39616418,39619527-39619635
          Length = 354

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 TLNS*GYECIKIKEAFFENVKYFLEKIVSHVQFC-LQVFIS*KNIGL*N*SQVAQDDE 315
           TL+S  +  IK+   F +N + F   ++S V FC  QV    KN+G    S+  + DE
Sbjct: 89  TLSSKRHPHIKVDFCFKKNFQLFHTSLISKVAFCGYQV----KNLGKFTDSEGDESDE 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,777,392
Number of Sequences: 37544
Number of extensions: 102961
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)