Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30653
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    28   0.036
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    28   0.036
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   7.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 0.036
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 109 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFLEKIVSHVQFCLQVFIS 264
           T+EK   +      N+  Y C+K+   F     Y+L +I  ++  C+ V +S
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI--YIPCCMLVIVS 259


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 0.036
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 109 TVEKLIQNVLKLTLNS*GYECIKIKEAFFENVKYFLEKIVSHVQFCLQVFIS 264
           T+EK   +      N+  Y C+K+   F     Y+L +I  ++  C+ V +S
Sbjct: 210 TLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI--YIPCCMLVIVS 259


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 10  SPIQMQLFLIDHQPFQH 60
           S ++  L  +DHQP+Q+
Sbjct: 504 SRVRAHLKRLDHQPYQY 520


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -1

Query: 220 FLENTLHFQKMPPLS*YIHTLNCLMSILKHF 128
           F +  +H   +  +  Y H  +  + +LKHF
Sbjct: 135 FSDKNIHVSFLRTVPPYSHQTDVWVELLKHF 165


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 207 LYIFKKCLLYLNTFI 163
           LYI   CL Y +T I
Sbjct: 309 LYILSGCLYYFSTTI 323


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 194 KNASFILIHSYP 159
           +  SFIL+H +P
Sbjct: 359 RRISFILVHGFP 370


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 273 HRFIKLVTGSSR 308
           HR+ K + GSSR
Sbjct: 244 HRWYKFIEGSSR 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,297
Number of Sequences: 438
Number of extensions: 1322
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)