Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30649
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    30   0.29 
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   1.5  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   2.0  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   3.5  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   6.2  

>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 538 DXRWLSICFNTQLMTNLTRLCYENDSSHEKGVKMAKRLDSYLYP 407
           D R   + F+ ++   ++RLCY  DS H   V++ +++ S +YP
Sbjct: 7   DGRQEKVAFD-KITARVSRLCYGLDSDHVDPVEITQKVISGVYP 49


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 361 YDKIFVPLYLLFFSRFCFYLFCSHFRIERMMISSYFK 251
           Y  +FVP+YL+  SR  FY   S  +I+ + +  Y +
Sbjct: 199 YSSVFVPMYLVMLSR--FYDTESSQKIQELPLEEYLE 233


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 316 NAKKTVDKEAQIFCHN-TNMAVKYDNNNLQMLDKDSC 423
           N   T+D EAQ F HN +  +V +DN+N     + +C
Sbjct: 59  NPDPTMDLEAQTFNHNESTTSVGHDNSNSPPKCRKTC 95


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 283 YENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNLQMLD 411
           YEN CK+ K   ++ ++++    F  N N    YD+N     D
Sbjct: 804 YEN-CKLGKLNLSETSINERVMGFSTNINETDNYDDNETTQSD 845


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 375 RHICIMTKYLCLFIYCFFRVSVFIYFAVIFVLNV 274
           RH       L +F YC F +  F  FA + + ++
Sbjct: 319 RHFSFGIVVLAIFSYCNFGIKQFFLFAAVMIYDL 352


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 520 ICFNTQLMTNLTRLCYENDSSHEKGVKMAKRLDSYLYPASVD---YYCHI*PPYLYY 359
           +C N   +T L ++  ENDS +E   K  +RL+  L     D   +  H  PP +Y+
Sbjct: 87  VCRNKINLTALQQVDAENDSLNELPEKTKERLEVSLKEEHQDNCLWRLHKFPPDIYH 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,517
Number of Sequences: 5004
Number of extensions: 43778
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)