Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30645
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887     28   1.7  
04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570     28   2.3  
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394...    27   3.0  
01_01_1221 + 9873399-9873869,9873969-9874033,9874226-9874655,987...    27   5.2  
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414...    26   6.9  

>04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887
          Length = 408

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 274 NIEFKYVLLKKVKRNTPNEFKILLHSC 194
           +I +KY +L+ + +N PN  ++ LH+C
Sbjct: 369 DIGYKYHVLRSILQNAPNLEQLRLHNC 395


>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
          Length = 440

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 253 LLKKVKRNTPNEFKILLHSCFFYSLPIR 170
           +LK V RN PN   + LH C F   P R
Sbjct: 362 VLKSVLRNAPNLEHLRLHRCKFLGTPKR 389


>04_03_1041 -
           21938347-21938529,21938618-21938773,21939291-21939408,
           21939536-21940203,21941773-21941802
          Length = 384

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 253 LLKKVKRNTPNEFKILLHSCFFYSLPIRWNRLLQ 152
           LL+ + +N+PN  K+ +H C F    + W +  Q
Sbjct: 304 LLRHLLQNSPNLEKLTVHCCKFSKGSLEWRKSSQ 337


>01_01_1221 +
           9873399-9873869,9873969-9874033,9874226-9874655,
           9874656-9874754,9874977-9875240
          Length = 442

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 264 LNMSYLKK*KETRLMNLKFYCTPVFFIPYLFAGIGYYRYARAGRELTGSNSEEI 103
           L++ +L K ++      KF    +F+  YL   IGY+RY    R L  +   ++
Sbjct: 192 LDLGFLTKARKYTFFKPKF----IFYATYLSEKIGYWRYITIFRHLKANPEYQV 241


>10_06_0139 -
           11139004-11139031,11139300-11141017,11141408-11141477,
           11142520-11143361
          Length = 885

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 217 FKILLHSCFFYSLPIRW 167
           F+ LLHSC FY +P +W
Sbjct: 640 FEWLLHSCIFYRVP-KW 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,643,760
Number of Sequences: 37544
Number of extensions: 100483
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)