Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30645
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    27   4.8  
AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical ...    26   8.3  

>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 256 VLLKKVKRNTPNEFKILLHSCFFYSL 179
           +L  + +RNT +++ I LH  F Y+L
Sbjct: 225 ILAVQARRNTSSQYTIALHRKFLYAL 250


>AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical
           protein H12C20.5 protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 ECNKILNSLGVFLFTFLSRTYLNSMFY 278
           EC  + N+L V  +TF+S  +LN + +
Sbjct: 175 ECTWVDNALEVIKYTFMSMAFLNCITF 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,841,656
Number of Sequences: 27780
Number of extensions: 91305
Number of successful extensions: 222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)