Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30644
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 119 3e-28
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 119 3e-28
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.7
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 26 5.7
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 26 5.7
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 119 bits (287), Expect = 3e-28
Identities = 52/81 (64%), Positives = 64/81 (79%)
Frame = +1
Query: 262 SQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGH 441
S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE APGGH
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245
Query: 442 LGRFVIWTQSAFGRLDPLFGS 504
LGRFVIWT+SAFG LD +FGS
Sbjct: 246 LGRFVIWTKSAFGLLDSVFGS 266
Score = 73.7 bits (173), Expect = 2e-14
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +2
Query: 77 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 253
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ KTK+AV L+ +KA+ D++K
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIK 182
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +3
Query: 525 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA 641
KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRA 313
Score = 35.9 bits (79), Expect = 0.005
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 GRMFAPTKPWRRWH 44
GRMFAPTK WR+WH
Sbjct: 99 GRMFAPTKTWRKWH 112
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 119 bits (287), Expect = 3e-28
Identities = 52/81 (64%), Positives = 64/81 (79%)
Frame = +1
Query: 262 SQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGH 441
S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE APGGH
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245
Query: 442 LGRFVIWTQSAFGRLDPLFGS 504
LGRFVIWT+SAFG LD +FGS
Sbjct: 246 LGRFVIWTKSAFGLLDSVFGS 266
Score = 73.3 bits (172), Expect = 3e-14
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +2
Query: 77 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 253
+ +VAA+GVP+L+ ARGH IE+IPE+PLVV D VQ KTK+AV L+ +KA+ D++K
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVK 182
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +3
Query: 525 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA 641
KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRA 313
Score = 35.9 bits (79), Expect = 0.005
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 GRMFAPTKPWRRWH 44
GRMFAPTK WR+WH
Sbjct: 99 GRMFAPTKTWRKWH 112
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 8 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH-IIEKIPELPL 163
+ PH L + AP QP E +V P+ +GH I + PL
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGHPTISNVATPPL 906
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 301 GCAFYPYQHEDAETCTLKDIRPCLEAPQEDDSL 203
G FY E+ +T T+ DI PC DSL
Sbjct: 732 GSRFYAQPEEEFQT-TMDDILPCYICESSSDSL 763
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 546 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATGKLK 656
+P +++TD ++ + +R + P + V++ TGKL+
Sbjct: 63 EPLVSSTDFSQQKSTSVMRTLSSIPPESVVQVTGKLQ 99
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 310 YDDGCAFYPYQHEDAETCTLKDIRPCLEAPQED 212
+DD F+ Y+ + C LK+++ E P E+
Sbjct: 309 FDDATGFF-YEQDAVAECLLKNMKEAPEIPHEE 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,657
Number of Sequences: 5004
Number of extensions: 51012
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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