Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30644
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 97 1e-20
07_01_0578 + 4295386-4296489,4297394-4297507 95 5e-20
08_02_1278 - 25838146-25839411 32 0.48
01_06_0317 + 28425408-28426079,28426286-28426351 29 3.4
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 4.5
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 28 7.8
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 7.8
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148... 28 7.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 97.1 bits (231), Expect = 1e-20
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +1
Query: 262 SQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGG 438
S +RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+ APGG
Sbjct: 189 SVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGG 248
Query: 439 HLGRFVIWTQSAFGRLDPLFGSWRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSG--RSS 612
HLGRFVIWT+ AF +LD ++G + K++ P P + + S L+ S +S
Sbjct: 249 HLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPR---PKMANADLSRLINSDEVQSV 305
Query: 613 VLPTN 627
V P N
Sbjct: 306 VKPIN 310
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/59 (47%), Positives = 43/59 (72%)
Frame = +2
Query: 77 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 253
+ ++AAT VP+LV ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D K
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEK 185
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = +3
Query: 507 ETPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATGKLKPVQPI 671
+TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V + P++ +
Sbjct: 272 DTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNV 326
Score = 36.3 bits (80), Expect = 0.022
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 3 GRMFAPTKPWRRWH 44
GRMFAPTK WRRWH
Sbjct: 102 GRMFAPTKIWRRWH 115
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 95.1 bits (226), Expect = 5e-20
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +1
Query: 271 LRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 447
+R GKGKMRNRR I RKGPLI++ + + +AFRN+PGV+ APGGHLG
Sbjct: 193 IRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLG 252
Query: 448 RFVIWTQSAFGRLDPLFGSWRHHRNKRRTSTCP 546
RFVIWT+SAF +L+ ++G++ K++ P
Sbjct: 253 RFVIWTESAFKKLEEVYGTFEAPSLKKKGFILP 285
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +2
Query: 77 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 253
+ ++AAT VP+LV ARGH IE +PELPLV++D + I KT QA+ L+++ A++D K
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEK 186
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +3
Query: 507 ETPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATGKLKPVQPI 671
E PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R + P++ +
Sbjct: 273 EAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNV 327
Score = 35.9 bits (79), Expect = 0.029
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 3 GRMFAPTKPWRRWH 44
GRMFAPTK WR+WH
Sbjct: 103 GRMFAPTKTWRKWH 116
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 226 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 119
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>01_06_0317 + 28425408-28426079,28426286-28426351
Length = 245
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 16 PPRSPGGAGTVASTSDSGERPWRQRCCYRRPSAR 117
PP P T + + + RPW R RRPSAR
Sbjct: 127 PPPPPPPPDTSVAAAAAAARPWNLRERKRRPSAR 160
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 492 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 370
G+ A G++ DD+ K SR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 425 WLREVILDVSSSGLSPHSAGLTPYSGHGDTIETKEELQPAPAK 553
W + ++ SS +P S+ + P+ D ++ QP+PA+
Sbjct: 29 WYPQSVVGSSSHPSTPSSSNVGPHQRASDNSQSSSRAQPSPAE 71
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 477 ECGLSPDDETSKMTSRSQLQEVQ 409
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
>01_03_0242 +
14113721-14113966,14114102-14114260,14114495-14114868,
14114939-14115419,14115651-14116192,14116253-14116531,
14116837-14116918,14116994-14117086,14117173-14117367
Length = 816
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 431 REVILDVSSSGLSPHSAGLTPYSGHGDTIETKEE 532
R+ + D++ + PH G + Y+GH +T EE
Sbjct: 168 RKKMSDLAKKNIYPHGLGSSGYAGHEKKWQTTEE 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,397
Number of Sequences: 37544
Number of extensions: 415955
Number of successful extensions: 1551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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