Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30644
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   100   1e-21
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  100 bits (239), Expect = 1e-21
 Identities = 49/115 (42%), Positives = 72/115 (62%)
 Frame = +1

Query: 256 YKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPG 435
           Y S+R RAGKGK+RNR+  Q+ GP++I+ +D    RAFRNIPGV+            APG
Sbjct: 183 YNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPG 242

Query: 436 GHLGRFVIWTQSAFGRLDPLFGSWRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRS 600
           GHLGR +IWT+SAF +LD ++G+   + ++ +     S   P + +  FS ++RS
Sbjct: 243 GHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGW--SVPLPIMANSDFSRIIRS 295



 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 33/59 (55%), Positives = 49/59 (83%)
 Frame = +2

Query: 77  LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 253
           +  ++AA+G+PAL+QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI K
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEK 181



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 30/40 (75%)
 Frame = +3

Query: 516 SKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI 635
           S+ KK +++P P MAN+D +R+++S+E+ K +RAP K  +
Sbjct: 271 SQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPV 310



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 3   GRMFAPTKPWRRWH 44
           G MFAP K +RRWH
Sbjct: 98  GHMFAPLKVFRRWH 111


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 429 SQLQEVQLVNIQELHTG--DVAEGASQTLILVEDYEGPLTLDTTTVAHFTL 283
           S L+  +   ++ LH    +  E + + L++++ +E   TL  TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,077
Number of Sequences: 27780
Number of extensions: 307517
Number of successful extensions: 997
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)