Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30642
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   1.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   3.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.8  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 554 TPN**PQVVIRRYAYRYLLQTFKIYL 477
           TPN  P V+I +Y+ ++L+Q   +YL
Sbjct: 478 TPNLPPMVIIEQYSAKFLIQQALLYL 503


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 166 PHPVAVSVPQYVKVPIPQPYPVHVTVEQP 252
           P PVAV   Q  +  I Q  P+HV+  +P
Sbjct: 278 PQPVAVEAIQQSRAVISQQLPLHVSPRKP 306


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 133 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 228
           V +++ +G P  H ++V  P YV   +P   P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 160 PIPHPVAVSVPQYVKVPIPQPYPVHV 237
           P P P AV VP     PIP P P  +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,529
Number of Sequences: 5004
Number of extensions: 56598
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)