Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30642
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 30 2.0
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 2.6
11_06_0679 - 26227654-26227770,26234067-26236217 29 3.4
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 29 3.4
01_06_1623 - 38716606-38717424 29 3.4
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 29 4.5
07_03_0698 - 20765305-20768526 28 6.0
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120... 28 6.0
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515... 28 7.9
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 28 7.9
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243... 28 7.9
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521 28 7.9
07_01_0359 - 2633735-2634115,2634345-2634600,2634708-2635552,263... 28 7.9
03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584 28 7.9
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 28 7.9
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 70 RPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 222
RPS GH H P + + + P P PV +SVP+ + P P P
Sbjct: 947 RPSRSEFKGGHDHRSPCVPSNRRDIPLVRRP-PSPVVLSVPRVPRPPPPSP 996
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 145 KKIGVPIPHPVAVSVPQYVKVPI--PQPYPVHVTVEQPI 255
K P P P AV +P+ V +P P P PV T P+
Sbjct: 746 KPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPV 784
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/60 (26%), Positives = 20/60 (33%)
Frame = -3
Query: 232 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQKAERWRAL 53
G GR W R G PD ++ P H T C C + P E R +
Sbjct: 589 GRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTEECRQM 648
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 151 IGVPIPHPVAVSVPQYVKVPIPQ-PYPVH 234
IG P+P+P +V VP V VPIP P+H
Sbjct: 91 IGPPLPYPFSVPVP--VPVPIPSGAVPMH 117
>01_06_1623 - 38716606-38717424
Length = 272
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 121 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPVHVTVEQPIMYLFIRLSTKLL 291
+PY V V++ IG PIP A +VP + +P+P E +YL S ++L
Sbjct: 11 RPYFVDVLQSIGHPIP---ATAVPD-ITLPVPPGERRTTRPESETVYLNFTPSPEML 63
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = -1
Query: 276 QPYKQVHDRLLHCDVDRVGLRYGHLHVLRDRHSHRMGNRNSDLLHHGHMVRLR 118
QP + VHDRL D R L R GNR D HHG R+R
Sbjct: 275 QPPRSVHDRLGDHD------REDELRGSRRPERGERGNRGDDGAHHGGRARVR 321
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 392 LRDGHLYFFFDLNGIRLFDFIGHWFFD-RVRYWFFNNLVDNLI 267
L G L L+GIR H F + +R+W F NL+D +I
Sbjct: 950 LNQGALDVLSRLDGIRYLRLCYHSFAEGALRFWSFGNLMDLII 992
>04_03_0784 -
19610370-19611548,19611830-19611919,19612001-19612076,
19612917-19613134,19613333-19613548,19613974-19614159,
19614242-19614364,19614456-19614571,19615126-19615588
Length = 888
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 369 FFRPQRDKAFRLHRALVFRPCTVLVFQQLGGQPYKQVHDRLLHCDVD 229
+FRP+ RL +VFR T L +++ K+V DRL D+D
Sbjct: 763 YFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKDID 807
>12_01_1091 +
11349034-11349438,11350581-11350748,11351189-11351500,
11351995-11352063,11352177-11352269,11352642-11352844,
11354783-11355056,11355561-11355606,11355646-11355806
Length = 576
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 30 NNSRPSLSSARQRSAF*RMGARRPHAHRTHEAVPCD-RGEEDRSSDSPSGGCVGPAVREG 206
+N RP+++ Q S + AR H A P + GEE +PS V A+R
Sbjct: 22 HNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTPSAAAVAEAIRRA 81
Query: 207 AHTS 218
+ S
Sbjct: 82 SSAS 85
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 369 FFRPQRDKAFRLHRALVFRPCTVLVFQQLGGQPYKQVHDRLLHCDVD 229
+FRP+ RL +VFR T L +++ K+V DRL D+D
Sbjct: 1282 YFRPEFLN--RLDEMIVFRQLTKLEVKEIAEIMLKEVFDRLKAKDID 1326
>11_06_0655 -
25923171-25923185,25923208-25923432,25923865-25924324,
25924330-25924985
Length = 451
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 199 VKVPIPQP--YPVHVTVEQPIMYLFIRLSTKLLKN 297
V P PQP +PVH+ VE + I +STK L N
Sbjct: 400 VPQPWPQPILFPVHIMVELEVSLKGIIVSTKKLVN 434
>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
Length = 481
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 PEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYPV-HVTVEQPIM 258
P+GHT E T + T + VPI P V V Q +P+ QP TV Q M
Sbjct: 269 PKGHT-AEGTMNF--TSIAPSQVPITQPFQVPVTQPSHIPLTQPSQTSQATVTQHYM 322
>07_01_0359 -
2633735-2634115,2634345-2634600,2634708-2635552,
2635681-2635956,2636778-2636941,2637924-2638197
Length = 731
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 149 FFTTVTWYGFVCSVCVWPSGSHSSEGRALASAT 51
F +V W FV +W S H S RA A +T
Sbjct: 155 FLLSVYWVSFVTYFVLWKSYKHVSNMRAAARST 187
>03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584
Length = 438
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 112 EHTKPYH-VTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 222
E T P+ V V + P+PVAV+V + P+PQP
Sbjct: 72 ESTTPHSPVAVDEPESSTAPNPVAVAVAEPKPAPVPQP 109
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 348 KAFRLHRALVFRPCTVLVFQQLGGQPYKQVHDRLLHCDVDRVGLRYGHLHVLRDRHSHRM 169
+A RL+ A VF + F+ G ++ +R++ +R H H RD H R
Sbjct: 95 RANRLNTAAVFHHPVLGDFEVPVGADDAELEERIIQHLAAAAAMRRSHRHGRRDGHRSRS 154
Query: 168 GNRN 157
G+ +
Sbjct: 155 GSHS 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,816
Number of Sequences: 37544
Number of extensions: 394428
Number of successful extensions: 1545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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