Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30640
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical...    28   5.8  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 683 LPMFTFYNLPSEPLSALVTGFTTFFCPLIPVFLGF 579
           LP FT+Y   S   + L TG  +F+C +IP    F
Sbjct: 82  LPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAF 116


>AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 683 LPMFTFYNLPSEPLSALVTGFTTFFCPLIPVFLGF 579
           LP FT+Y   S   + L TG  +F+C +IP    F
Sbjct: 82  LPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAF 116


>AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical
           protein C17B7.2 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 528 SQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GLRGKVVKGEHGKRVRKIR 701
           S +C +Q    + E+CTEA K  +   +   ++C   T  LR      E+ +R RK++
Sbjct: 14  SAHCASQIEKLKSENCTEADKFLEMSCQLFDKSCTQLTACLRTLQCGPENPERKRKLK 71


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 134 VSQNTGTCPESSCACPETSCAC 199
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,955,851
Number of Sequences: 27780
Number of extensions: 112405
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)