Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30636
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    31   0.10 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   2.2  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   2.9  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   2.9  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   5.0  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   5.0  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   6.7  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    24   8.8  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 277 WSSQYRSDLAAQNFEEAIVSPI*VPRVCNKP 185
           W SQYRSD+   N  E +   I VP   N P
Sbjct: 123 WKSQYRSDILINNLTETLFESI-VPDTTNSP 152


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 161 GVENDNKYWLIANSWNSDWGDNGFFK---ILRGEVTAVLRAPLLRVNL 295
           GV+ND+ YW  A++ N+  G   FF    I R     +L++  L V+L
Sbjct: 569 GVQNDHAYWSSASNPNNVSGAFRFFPHTIIFRTNKELILQSIRLSVSL 616


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 140 RVKILGWGVENDNKYWLIANSWNSDWGDNGFFKILRGEVTAVLRA 274
           R+KI+ + V+N+ +Y  + ++    W   G     RG  T  LRA
Sbjct: 43  RMKII-FQVQNNKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRA 86


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 255 TSPRKILKKPLSPQSEFHEFAISQYLLSFSTPQPNILT 142
           T+P K+ K  + P+ E+H    +    S   P+ N++T
Sbjct: 75  TAPEKLPKDVIIPEEEYHTDTFNVVKESNDKPKENLVT 112


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 161 GVENDNKYWLIANSWNSDWGDNGFFKILRGEVTAVLRAPL 280
           G + ++ YW +    + D   +  + I+R  V +VL+AP+
Sbjct: 109 GFDKESTYWKLEKILDKDLDMDVNYCIIRFTVPSVLKAPI 148


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 164 VENDNKYWLIANSWNS-DWGDN 226
           +E   ++WL+  SWN+   GDN
Sbjct: 510 IETKGRWWLVGASWNNVPSGDN 531


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 33  LFKNGPVEGAFTVY--SDLLSYKSGVYKHTQXDAL 131
           ++ NGPV G  T+Y  S++ S  S  Y +T   +L
Sbjct: 46  IYTNGPVPGTTTIYPTSNVASNTSENYPYTGSKSL 80


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 133 PRASXCVCLYTPLLYDSKSEYTVKAPSTG 47
           P+ S    LYT L+ D+  EY+  A   G
Sbjct: 549 PKVSVSTTLYTRLIEDALGEYSYPASLAG 577


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 74  IYCESTFDRTILEQFGADV 18
           +Y ESTFDR +L+    DV
Sbjct: 364 LYAESTFDRILLDDRYIDV 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,067
Number of Sequences: 5004
Number of extensions: 34838
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)