Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30634
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    32   0.52 
Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical...    28   8.5  
AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical...    28   8.5  

>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
           protein C34E10.8 protein.
          Length = 1024

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 115 RCPAQALPAAKHCLKHILHDRHQALYIACGVC 210
           +C   AL  +K C  HI+ DR Q ++  C  C
Sbjct: 256 QCNKPALHLSKFCFDHIILDRSQKMFDVCNAC 287


>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 612 FTFAIDYFHITCQFHLWLLKVVLYNYFNTLKNLLGH 505
           +T A  +F+++C    WL ++  YN F+T   +LGH
Sbjct: 249 YTMAATFFYLSCHIPFWLPQI--YNIFST---VLGH 279


>AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5b protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 352 HEQKQLNQKCTRTHRTHCGDSSLTYSTTCSVGTNSE 459
           H  +  N+K T   R    +  +TYST  SV  +SE
Sbjct: 114 HSNRHENRKSTAVKRPAADNRPMTYSTDVSVSRHSE 149


>AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5a protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 352 HEQKQLNQKCTRTHRTHCGDSSLTYSTTCSVGTNSE 459
           H  +  N+K T   R    +  +TYST  SV  +SE
Sbjct: 159 HSNRHENRKSTAVKRPAADNRPMTYSTDVSVSRHSE 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,855
Number of Sequences: 27780
Number of extensions: 238695
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)