Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30633
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.4  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.6  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   7.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.7  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    25   9.7  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   9.7  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 479 VYNTYLMPI*ESIFHNAEKVDDLSKTIAF 393
           +YN++++PI +S F+  E  D  ++T+ F
Sbjct: 431 LYNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 631 KKLVSKIGHD*QFFLENTLHFQKMP 557
           KKL S +    Q  LEN LHF   P
Sbjct: 610 KKLASALASQDQLVLENALHFVNPP 634


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 428  QHCGILILK*ALDKCYKPTVEKLIQNV 508
            +HCGI I++  L   Y P  ++L+Q V
Sbjct: 1056 EHCGIRIIEAELFHGYNPEKKELLQEV 1082


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 250 MISLLFHYVPGCMNFIMYCICLERVM*CT 336
           ++  LF Y   C N I Y I L+ ++ C+
Sbjct: 320 LLDFLFDYARSCQNTISYPIALQCLIYCS 348


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 388 HSNAIVFDRSSTFSALWN 441
           H    VFD++S F++LWN
Sbjct: 457 HCLQSVFDKNSDFASLWN 474


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 544 YIHTLNCLMSILNILY*FLNSRFI 473
           Y HT  C   ++ I+Y FL ++ I
Sbjct: 61  YKHTCRCFQQVVRIVYWFLGNQVI 84


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 572 FSKNASFILIHSYP*LFNVNFKHFVLISQQ*VYNTYLMPI*ESIFHNAEKVDDLSK 405
           F+ NA +  +H  P  F  NF          V  TY+ P  E+ +   +K  +  K
Sbjct: 236 FANNARYHDLHHQPYGFQKNFSQPFFTFWDHVLGTYMPPKSETPYEKKQKAKNAKK 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,253
Number of Sequences: 5004
Number of extensions: 45534
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)