Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30633
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    30   1.3  
AF040649-2|AAB95004.2|  324|Caenorhabditis elegans Serpentine re...    27   9.0  
AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 32  EDDEVPNLVGNFDEASK 82
           ED++VP LVG+FD ASK
Sbjct: 137 EDEDVPELVGDFDAASK 153


>AF040649-2|AAB95004.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein74 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -2

Query: 514 ILNILY*FLNSRFITLI*CLFENQYSTMLKRLMIYQKQLHLNGAARFPEPSLRIKNLVSP 335
           ILN LY       + ++ C++ N  S   +  ++Y K+++  G  +F +    +  + SP
Sbjct: 133 ILNFLYSMCF--ILPIVMCVWVNSLSLSREEALVYIKEVYPKGYLQFSKLPNFVVYVKSP 190

Query: 334 YITSL 320
           Y T L
Sbjct: 191 YTTLL 195


>AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.3 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 217 KGFRSHLCLKRMISLLFHYVPGCMNFIMYCICL 315
           K F S  C K ++S L+  V GC+  ++  +CL
Sbjct: 151 KFFGSTFCEKLIVSSLWSIVAGCILLLICVVCL 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,266
Number of Sequences: 27780
Number of extensions: 256538
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)