Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30632
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    30   0.22 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    29   0.67 
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   3.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.5  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   8.2  

>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +1

Query: 238 IPVRSTSSSATSLQDFILPNM-GLQDITIQL-QNVTEPNPRNP 360
           IPV+    S+T+L+  I PN+ G+Q  TI L +  TE  P++P
Sbjct: 154 IPVKLKKHSSTNLRSIIRPNIEGVQIHTIHLPRPKTEDKPKDP 196


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -2

Query: 167 AVFRHLDRSGLNHSWIT*QTVGRACR------LQCPWARACA 60
           A F+ LD   +N SW   QTV   C       ++ PW R CA
Sbjct: 197 AFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 VRSTSSSATSLQDFILPNMGLQ-DITIQLQNVTEPNPR 354
           +RS      SL++   P + L+ +IT+Q++  ++PN R
Sbjct: 56  IRSLIDEKESLKNEFFPLLSLKKEITLQIERCSDPNER 93


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 512 LKNYVHLTLKYSKMNTSAFWFFKCYT*IKNRICGLRRVFHFNFA 381
           L+N   L  KY +   S+++F KC   I + +   +R FH +F+
Sbjct: 605 LRNLPLLLQKYRESCVSSYFFIKCVEQIPDELL-YKREFHKDFS 647


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 238 IPVRSTSSSATSLQDFILPNMGLQDITIQLQNVT-EPNPRNPPMSV*NVAKLK*NTRLKP 414
           +P  S+  S+TS   ++  +    D      ++T +P+PR+P      +  LK NTR  P
Sbjct: 76  LPTPSSDKSSTSPFPYLKGSF--DDRFSSTHSLTRQPSPRSP------LTPLKGNTRASP 127

Query: 415 QIRF 426
           +IR+
Sbjct: 128 EIRY 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,785
Number of Sequences: 5004
Number of extensions: 45780
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)