Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30632
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    29   1.9  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    29   2.4  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    29   2.4  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    29   2.4  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    28   4.3  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    28   4.3  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    28   4.3  

>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 281 TSFYQTWACRTSLFNCKTSPNLTHGTLPCLFKMSQN-*NEIRVLNHKFDF 427
           T+ Y     R +L+N   S    H  LPC  ++ +N  N++RVL  +F +
Sbjct: 827 TNRYSDDFYRAALYNSLASSVFPHDALPCHVELPENLSNDVRVLIKEFTY 876


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 15  ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 113
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 15  ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 113
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 15  ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 113
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 268 TSLQDFILPNMGLQDITIQLQNVTEPNPRNP 360
           ++++ F+LPN   + IT+QL  V  P+ RNP
Sbjct: 206 STVRAFLLPNF--EYITLQLSGVRAPSTRNP 234


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 525 LSRLTKKLCTFNIK-IF*DEYISLLVF*MLHLNKKSNLWFKTRISF*FCDIL 373
           L +L+K     N+K IF   ++SL+ F M HL   +    K+ IS   CD++
Sbjct: 43  LFKLSKSSFHGNLKTIFISYFVSLVAFSMTHLTTSTTQIIKSIISTDNCDLI 94


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = +1

Query: 268 TSLQDFILPNMG--LQDIT---IQLQNVTEPNPRNPP 363
           T +Q  I+P MG  LQDI    + L++V E NPR+PP
Sbjct: 301 TDMQS-IIPQMGGDLQDIKKARMLLKSVRETNPRHPP 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,117
Number of Sequences: 27780
Number of extensions: 263922
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)