Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30631
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.2  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   6.4  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   6.4  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    24   8.5  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 361 DIVQVNNRISRVRTFLLFTAKCSRV 287
           +IV++NNR+  V  F L    CS+V
Sbjct: 394 NIVEINNRLDLVEKFKLLPELCSKV 418


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 192 WQYTTCPFSFLLHNVRQGQDD 254
           W+ T  P+S LLH+++ G  D
Sbjct: 293 WKQTAFPWSNLLHHIKLGMLD 313


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 239 SNVM*KERERTSCILPSLYKIVQKSKSCIFW 147
           SN++ K+ E T  +LP +  +  K K  I W
Sbjct: 176 SNLIYKDSESTPILLPLIDSLNHKPKQPILW 206


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 6   SLNDYCNAWNYLLYISC 56
           S +++CN+W   +YI+C
Sbjct: 242 SPDEHCNSWIQRIYITC 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,376
Number of Sequences: 5004
Number of extensions: 27923
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)