Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30631
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0281 + 26912419-26913099                                         28   3.6  
01_01_0248 + 2041015-2041762,2042112-2042149                           27   4.7  
01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538           27   6.2  
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711...    27   8.2  

>05_06_0281 + 26912419-26913099
          Length = 226

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 142 CCGRPGTRPPT 110
           CCGRPG  PPT
Sbjct: 174 CCGRPGPAPPT 184


>01_01_0248 + 2041015-2041762,2042112-2042149
          Length = 261

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 337 ISRVRTFLLFTAKCSRVSLTGS 272
           +SR  + LLF+A CSR   TGS
Sbjct: 121 VSRANSELLFSANCSRTPPTGS 142


>01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538
          Length = 336

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 337 ISRVRTFLLFTAKCSRVSLTGS 272
           +SR    LLF+A CSR   TGS
Sbjct: 196 VSRANAGLLFSANCSRTPPTGS 217


>03_05_0328 -
           23170019-23170168,23170865-23170903,23171043-23171141,
           23171214-23171342,23171915-23172061,23172959-23173089,
           23173938-23174157,23174294-23174387,23174469-23174581,
           23174727-23174861,23175231-23175335,23175440-23175544,
           23176240-23176327,23176415-23176536,23176611-23176670,
           23177434-23177529,23177620-23177772,23177865-23177951,
           23179179-23179246,23179603-23179726,23180235-23180330,
           23180430-23180539,23180647-23180761,23181622-23181699,
           23181843-23181908,23182203-23182363,23182781-23183099
          Length = 1069

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 21  CNAWNYLLYISCSRGPGVDT 80
           C AWNY++    +RGP + T
Sbjct: 104 CMAWNYVINYLATRGPKLQT 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,633,504
Number of Sequences: 37544
Number of extensions: 185318
Number of successful extensions: 366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)