Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30630
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 0.75
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 0.99
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 27 3.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 3.0
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 5.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 7.0
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 7.0
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.2
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 9.2
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.2
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 25 9.2
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 455 VQSSESLKRAQTNNWPIKNIMV*SMLRLLVVTNSIL*TS 571
VQ++ES+ + + +W +KN+++ +++ T S L TS
Sbjct: 15 VQAAESISKDELYSWTLKNVLILFLVQYRASTPSALQTS 53
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.3 bits (60), Expect = 0.99
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 576 LGLVYNIEFVTTRSLNILQTIMFLIGQLLVCALFRLSLDCT 454
+ L NIE + N T +FLI L LFRL LD +
Sbjct: 393 VSLWLNIESLMNDDGNYAPTTLFLISDFLKSTLFRLLLDAS 433
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 255 HKILLLKSYLRL*IRNEEHDR*PFCYLTTLSL 160
HK + +++Y L R EE + P+C T + L
Sbjct: 206 HKFISMQNYHNLLYREEEREMIPYCQKTGVGL 237
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 64 RYKFIIIHRLNNHTKYI 114
RYK I+H LNN KY+
Sbjct: 589 RYKTNIVHSLNNEQKYV 605
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -2
Query: 588 FINWLGLVYNIEFVTTRSLNILQTIMFLIGQLLVCALFRLSL 463
F++ + + ++I F+ +++NI+ I+ I LL C F + L
Sbjct: 98 FLSAIFVFFSI-FLVNQAVNIINIIVVFITTLLTCLAFAIEL 138
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +1
Query: 145 SELKS*AQSC*IAKWLAVVLFISYLKSQI 231
SE+K + I+ W++++LF+S+L ++
Sbjct: 505 SEIKQYSSLILISLWISLILFVSFLNRRL 533
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 199 RPLTILLFNNFELMTLVQN*VI 134
+ L +L+FNN +L TL+QN ++
Sbjct: 131 KQLFLLIFNNGKLRTLLQNAIV 152
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 9.2
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -3
Query: 545 PPGASTYFRPLCF*LASC*SAPSSDSHLTVL*CQGNHFLVRNALHHSCRSVQQQNVYLQG 366
P G+ P F +S S PS+ S + + G++F + S +S+QQ N + G
Sbjct: 191 PTGSVNSNMPFQFHQSS--SVPSTPSEVAM----GHNFCPMSRNDPSLQSIQQTNGFYSG 244
Query: 365 HIQP 354
H P
Sbjct: 245 HNSP 248
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 427 FVMRYTIVVGQFNNKMCIFRAISNHGF 347
+ M+ +I++G + C+F ++SN+ F
Sbjct: 523 YKMKLSIILGVIHMTFCLFLSLSNYRF 549
>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 504 IGQLLVCALFRLSLDCTVMPRKSFPCS*CVT 412
+G++ + L +L + T PR+SF CS +T
Sbjct: 76 LGEMSLKFLIKLIVKMTDCPRQSFSCSELIT 106
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 619 NSPMKLSQWDLYQLVGACL 563
+S LS+W+ Y L G CL
Sbjct: 57 SSEFSLSRWERYMLFGICL 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,605
Number of Sequences: 5004
Number of extensions: 56065
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -