Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30630
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786... 61 8e-10
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 58 8e-09
05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710 53 2e-07
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536... 52 4e-07
08_02_0440 + 17192122-17192691,17193947-17194912 30 1.3
06_01_0144 + 1089090-1091390 30 1.8
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 29 4.1
03_05_0920 - 28812796-28813325,28814019-28816377 28 7.2
>05_03_0055 -
7863410-7863530,7864205-7864314,7864341-7864553,
7865342-7865406,7865511-7865635,7865936-7866164,
7866270-7866348
Length = 313
Score = 60.9 bits (141), Expect = 8e-10
Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 233 DFNSKILWEILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVVELTYNYG 412
D K E LGMK+LR + E R++ +GYGPED+HFVVELTYNYG
Sbjct: 99 DKTIKFYTECLGMKLLRKRDIPE-----------ERYTNAFLGYGPEDSHFVVELTYNYG 147
Query: 413 VTHYEQGNDF--LGITVQ 460
V Y+ G F GI V+
Sbjct: 148 VESYDIGTAFGHFGIAVE 165
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 57.6 bits (133), Expect = 8e-09
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +2
Query: 338 RWSKTMVGYGPEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQ 487
+++ M+GYGPED + V+ELTYNYGVT Y++GN + I + + + K A+
Sbjct: 249 KYTVAMMGYGPEDKNAVLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAE 298
Score = 54.8 bits (126), Expect = 5e-08
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 233 DFNSKILWEILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVVELTYNYG 412
D K E LGMK+LR + E +++ +GYG ED HFVVELTYNYG
Sbjct: 95 DRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGAEDNHFVVELTYNYG 143
Query: 413 VTHYEQGNDF--LGITV 457
V Y+ G F GI V
Sbjct: 144 VDKYDIGAGFGHFGIAV 160
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 520 LKYVEAPGGYKFYIVDKPQPVDKDPIVKVSLASSNL 627
+ +VE P GYKF I+++P +P+ +V L NL
Sbjct: 191 IAFVEDPDGYKFEILERPG--TPEPLCQVMLRVGNL 224
>05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710
Length = 92
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 356 VGYGPEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQ 487
+GYGPED + V+ELTYNYGV Y++GN + I + + + K A+
Sbjct: 1 MGYGPEDKNAVLELTYNYGVKEYDKGNAYAQIAISTDDVYKTAE 44
>08_01_0610 -
5367271-5367312,5367737-5367805,5368208-5368360,
5368441-5368548,5368689-5368736,5368868-5369083,
5369195-5369259,5369478-5369602,5369675-5369793
Length = 314
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/85 (34%), Positives = 43/85 (50%)
Frame = +2
Query: 233 DFNSKILWEILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVVELTYNYG 412
D K E GMK+LR + E +++ +G+GPEDT+F +ELTYNYG
Sbjct: 36 DRTIKCYTECFGMKLLRKRDVPE-----------EKYTNAFLGFGPEDTNFALELTYNYG 84
Query: 413 VTHYEQGNDFLGITVQSSESLKRAQ 487
V Y+ G F + + + K A+
Sbjct: 85 VDKYDIGAGFGHFAIATEDVYKLAE 109
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/85 (32%), Positives = 46/85 (54%)
Frame = +2
Query: 233 DFNSKILWEILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVVELTYNYG 412
D + K + LGMK+LR ++ + +++ M+GY ED V+ELTYNYG
Sbjct: 167 DRSIKFYEKALGMKLLRKKDVPD-----------YKYTIAMLGYADEDKTTVIELTYNYG 215
Query: 413 VTHYEQGNDFLGITVQSSESLKRAQ 487
VT Y +GN + + + + + K A+
Sbjct: 216 VTEYTKGNAYAQVAIGTEDVYKSAE 240
>08_02_0440 + 17192122-17192691,17193947-17194912
Length = 511
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 382 MCIFRAISNHGFAPSVC-IRSIASCLTSFTKLFMAENLHSE 263
+C+FR++ G P+V S+ CL S +L AE+L E
Sbjct: 307 LCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAESLLDE 347
>06_01_0144 + 1089090-1091390
Length = 766
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -1
Query: 544 HQEPQHTSDHYVFNWPVVSLRPLQTLT*LYCDAKEIISLFVMRYTIVVGQFNNKMCIFRA 365
+ E +++Y PVV P + C + L VM TIV+ N + F++
Sbjct: 342 NDEVNFLAEYYHSVLPVVLASPYFFVVNYLCFPVVVFGLCVM--TIVLCGNGNVLYAFKS 399
Query: 364 ISNHGFAPSVCIRSIASCL 308
++N +A S I S+ CL
Sbjct: 400 LTNDNYAVSSGILSLTKCL 418
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 335 NRWSKTMVGYGPEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQT 490
N WS + PED++ + + T E +FLG+T +L+ QT
Sbjct: 80 NLWSVRIFSSNPEDSYVLSMMKPPLNDTDEEAKRNFLGLTSVEDRTLQPGQT 131
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 607 KLSQWDLYQLVGACLQ--YRICNHQE-PQHTSDHYVFNWPVVSLRPLQ 473
K+ +L L+G CL RI ++ PQ T ++F W +LRPL+
Sbjct: 659 KVRHRNLVSLLGYCLDGNERILVYEYMPQGTLSQHLFEWKEHNLRPLE 706
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,856
Number of Sequences: 37544
Number of extensions: 327022
Number of successful extensions: 667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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