Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30630
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 233 DFNSKILWEILGMKVLRHEEFSEGCE 310
           +F + + W+IL +  +R+E+F   C+
Sbjct: 199 EFYTSVEWDILEVPAVRNEKFYTCCD 224


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -2

Query: 528 ILQTIMFLIGQLLVCALFRLSLDCTVMPRKSF 433
           I+  ++ L+G ++  ++F+  +   + PR SF
Sbjct: 187 IVSGLLMLVGMVMYISVFKAEVGSKLRPRSSF 218


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 DFNSKILWEILGMKVLRHEEFSEGCE 310
           ++   + W+ILG+   RH+++   C+
Sbjct: 194 EYYPSVEWDILGVPAERHKKYYPCCD 219


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 DFNSKILWEILGMKVLRHEEFSEGCE 310
           +F   + W+IL +  +R+E+F   C+
Sbjct: 203 EFYMSVEWDILEVPAVRNEKFYTCCD 228


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 DFNSKILWEILGMKVLRHEEFSEGCE 310
           +F   + W+IL +  +R+E+F   C+
Sbjct: 203 EFYMSVEWDILEVPAVRNEKFYTCCD 228


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 233 DFNSKILWEILGMKVLRHEEFSEGC 307
           DF   + W+IL +   R+EE+   C
Sbjct: 208 DFYLSVEWDILEVPASRNEEYYPCC 232


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +2

Query: 350 TMVGYGPEDTHFVVELTYNYGVTHY-EQGNDFL 445
           T+V  GPE        TY Y  + Y  QG+  L
Sbjct: 242 TIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAIL 274


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 233 DFNSKILWEILGMKVLRHEEFSEGCE 310
           D+   + W+I+ +  +R+E F   CE
Sbjct: 195 DYYISVEWDIIKVPAVRNEAFYICCE 220


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 103 TKYIHSLSLH 132
           TKY HSL LH
Sbjct: 54  TKYCHSLKLH 63


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 446 QGNHFLVRNALHHSCRSVQQQNVYLQG 366
           Q +H L  N+   S +S QQQ   LQG
Sbjct: 808 QSHHGLHINSSPSSVQSGQQQQSVLQG 834


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,464
Number of Sequences: 438
Number of extensions: 3950
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)