Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30629
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.          165   3e-43
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score =  165 bits (402), Expect = 3e-43
 Identities = 81/84 (96%), Positives = 81/84 (96%)
 Frame = +1

Query: 1   KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKXISGLIYEETRGVLKVFLENVIR 180
           KGLGKGGAKRHRKVL DNIQGITKPAIRRLARRGGVK ISGLIYEETRGVLKVFLENVIR
Sbjct: 9   KGLGKGGAKRHRKVLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIR 68

Query: 181 DAVTYTEHAKRKTVTAMDVVYALK 252
           DAVTYTEH KRKTVTAMDVVYALK
Sbjct: 69  DAVTYTEHTKRKTVTAMDVVYALK 92



 Score = 26.6 bits (56), Expect = 0.23
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +3

Query: 255 QGRTLYGFGG 284
           QGRTLYGFGG
Sbjct: 94  QGRTLYGFGG 103


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 249 QSVHNIHSGDGLPLGVFGVCDSVADHV--FEEHFENAAGLFVYKTGD 115
           Q +H++H+     + +  V DS  +HV  + +   N  G  V   GD
Sbjct: 324 QMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGNGD 370


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 243 VHNIHSGDGLPLGVFG 196
           VHN+H   G+  G+FG
Sbjct: 331 VHNLHGMPGILGGIFG 346


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 249 QSVHNIHSGDGLPLGVFGVCDSVADHV--FEEHFENAAGLFVYKTGD 115
           Q +H++H+     + +  V DS  +HV  + +   N  G  V   GD
Sbjct: 324 QMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGNGD 370


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 81  PSFGSQRWSETXLRSYIRRDPRRSQSVPRKRDPRRCHIHRTRQEED 218
           PS   + W+E  L + +R DP +  ++  +    + + H TRQ ED
Sbjct: 22  PSVMLKIWTEEFLSTILRLDP-KFIALHCQEVGGKNYEHSTRQVED 66


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 460 SRTFCCR*CCKSIASDVVRLI 522
           ++TFCC+  C  +  ++ + I
Sbjct: 454 TKTFCCKGYCMDLLKELSKTI 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,059
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)