Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30627
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0485 - 8808139-8808618                                           37   0.016
03_02_0484 + 8805053-8805538                                           37   0.016
03_02_0483 - 8804021-8804485                                           37   0.016
03_02_0478 + 8775892-8776377                                           36   0.028
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           35   0.064
01_01_0229 - 1943473-1943922                                           34   0.084
01_01_0231 + 1951047-1951499                                           34   0.11 
02_05_0494 + 29486960-29487454                                         33   0.19 
12_01_0061 + 514798-515967                                             32   0.34 
01_01_0227 + 1933247-1933699                                           31   0.59 
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236...    30   1.4  
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    30   1.8  
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806...    29   4.2  
01_05_0796 - 25297792-25298514                                         29   4.2  
08_02_0667 - 19834793-19834911,19836216-19836345                       28   5.5  
04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562     28   7.3  
02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467           28   7.3  
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227...    27   9.7  

>03_02_0485 - 8808139-8808618
          Length = 159

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPGRYP 521
           S +F+RR+ LPE   PE +++ +  +GVLT+T P   P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147


>03_02_0484 + 8805053-8805538
          Length = 161

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPGRYP 521
           S +F+RR+ LPE   PE +++ +  +GVLT+T P   P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149


>03_02_0483 - 8804021-8804485
          Length = 154

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPGRYP 521
           S +F+RR+ LPE   PE +++ +  +GVLT+T P   P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142


>03_02_0478 + 8775892-8776377
          Length = 161

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S +F+RR+ LP+ A PE +++ +  +GVLT+T P
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVP 145


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S QF+RR+ LPE A  + V++ L  +GVLT+T P
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVP 134


>01_01_0229 - 1943473-1943922
          Length = 149

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S QF+RR+ LPE A  + V++ +  +GVLT+T P
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVP 133


>01_01_0231 + 1951047-1951499
          Length = 150

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S QF+RR+ LPE A  + V++ +  +GVLT+T P
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVP 134


>02_05_0494 + 29486960-29487454
          Length = 164

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 411 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPGR 515
           R  V ++ LPE AA +   +R++ DGVLT+T P R
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139


>12_01_0061 + 514798-515967
          Length = 389

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 609 SWVPSLWSLISLRTGPVCAMGTFLSPLTASGTFL 508
           SW PS  +LISL +G  CA   F S + A+  FL
Sbjct: 295 SWSPSKLNLISLGSGRFCAAKIFRSNMPAAAAFL 328


>01_01_0227 + 1933247-1933699
          Length = 150

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S +F RR+ LP GA  + V + +  +GVLT+T P
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVP 134


>11_06_0022 +
           19321886-19321918,19323059-19323131,19323587-19323680,
           19324383-19324499,19324584-19324641,19324713-19325114
          Length = 258

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 423 RRYALPEGAAPETVESRLSSDGV--LTITAPGRYPTPSRERERCPSHR 560
           RR ALP G+ PE  ESR S   V    I+  GR     R R R P+ R
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPPTKR 152


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -3

Query: 465 PQSQAPRLQAARNVGRTA-LKYTRARLSSLRACLPP--RCTRRQSSPKSLPARSAARPD* 295
           P+ Q P  +  R       ++  RA  + +  C+ P  R  R       L A  +A+   
Sbjct: 598 PRKQMPEFETTRYFNLAGFVEQLRALAAEVGYCITPEYRVVRNFEDKGVLEALWSAKSSP 657

Query: 294 LGTCPCRPL 268
            GTCP RPL
Sbjct: 658 YGTCPSRPL 666


>02_05_0276 +
           27378994-27380094,27380185-27380250,27380586-27380660,
           27381927-27382025,27382353-27382436,27382519-27382868,
           27383190-27383406,27383579-27383658,27383760-27383850,
           27386544-27386672,27388771-27388858,27389967-27390097
          Length = 836

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = -3

Query: 366 PPRCTRRQSSPKSLPARSAARPD*LGTCPCRPLCWSRVTRCSRELSPRSEV 214
           P R TRR++SP S PA  AA P   G    R +    V  C  EL P +E+
Sbjct: 94  PARSTRRKTSPGSSPASVAAAPG--GLDAVRTM----VAVCLLELVPFAEI 138


>01_05_0796 - 25297792-25298514
          Length = 240

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = -3

Query: 465 PQSQAPRLQAARNVGRTALKYTRARLSSLRACLPPRCTRRQSSPKSLPARSA 310
           P   APR   +  VGR   + TRA    LR     RC RR+ S  S  A  A
Sbjct: 130 PARAAPRRSRSEKVGR-GRRPTRAASPELRRSESERCRRRRRSLSSSSASLA 180


>08_02_0667 - 19834793-19834911,19836216-19836345
          Length = 82

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 432 ALPEGAAPETVESRLSSDGVLTITAPGRYPTPS-RERERCPSHRPVP 569
           A+  GAA + + +  S DG   I + GR P PS +    C +H   P
Sbjct: 15  AIASGAATDWIGASSSMDGFGRIRSDGRGPIPSGKSTMACTAHLGCP 61


>04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562
          Length = 285

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 348 RQSSPKSLPARSAARP-D*LGTCPCRPLCWSRVTRCSRELSP 226
           R+++P +LP R AARP   L  CP R    S      R L+P
Sbjct: 23  RRATPLALPRRGAARPLASLAQCPARGHSPSPRRAAGRALAP 64


>02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467
          Length = 734

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 248 LVTRLQHKGRQGQVPSQSGRAALLAGRDFGE 340
           +V  L+H+GR  Q PS+   A  LAG D  E
Sbjct: 475 IVHALRHQGRHQQQPSERDLARCLAGGDDDE 505


>01_01_0277 +
           2274383-2274465,2274889-2274955,2275040-2275110,
           2275550-2275667,2275755-2275828,2276094-2276149,
           2276237-2276320,2276422-2276509,2276602-2276679,
           2276814-2276870,2277074-2277578
          Length = 426

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 424 DVTRCLKARRLRLWNRGCHQTGFSP 498
           +    + A R+RLWN+G     F P
Sbjct: 178 ETAHVISANRIRLWNKGVDSASFHP 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,578,746
Number of Sequences: 37544
Number of extensions: 403413
Number of successful extensions: 1478
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)