Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30624
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 31 0.094
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.094
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 28 0.88
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.5
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 27 1.5
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 27 2.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 26 3.5
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 3.5
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 4.7
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 6.2
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 6.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 8.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.2
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 8.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.2
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 8.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.2
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 25 8.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.2
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 8.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.2
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 8.2
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 8.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.2
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 31.5 bits (68), Expect = 0.094
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +1
Query: 157 PNETGGET-SAEVTKAKRQEHLQELQVLSGLASLEECKWADKVAQNAKCE--GKTHETNS 327
P GG++ + E+TK K++++ E L +AS E D+ + N + + G +
Sbjct: 398 PGNHGGKSINEEITKNKQKQNFNESD-LKNMASRIETFINDEASNNHREDFYGVKNSDTD 456
Query: 328 LDPKKRNSLSFFIGMEVNSGKSVVDTIKTNTEKMIAEITEKYG--DLDEFTPGDRSDLDL 501
D I + N G V+ +T ++ KY D+DEF+ G+ ++D+
Sbjct: 457 TDSDSLADSDDEIFLNRNQGIDEVEFDETKFYDLLKGKDGKYQNQDVDEFSSGNEDEMDI 516
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.5 bits (68), Expect = 0.094
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 125 PKVP--PRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPKTPN 298
P +P P +LN+++P PP +L P + F Y + P P + A +P + N
Sbjct: 506 PPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPGSYN 565
Query: 299 AKE 307
E
Sbjct: 566 TSE 568
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 0.88
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 151 PEPNETGGETSAEVTKAKRQEHLQELQVLSGLASLEECKWADKV 282
P P+ GG +S E K + + + L + + EE + +DKV
Sbjct: 143 PPPSTVGGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDEKSDKV 186
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +2
Query: 110 PDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK 289
P K PP P + P+ PP S P A + + P P + N +SPK
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAP--PAGHAPNVTSESPK 237
Query: 290 TPN 298
PN
Sbjct: 238 FPN 240
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 142 EFPPEPNETGGETSAEVTKAKRQEHLQELQVLSGLASLEECKWADKVAQNAK 297
+ P+ T E + A+ Q+HLQE +++ L +L W + VAQ A+
Sbjct: 625 DLTPQQTHTFYEACGYMISAQPQKHLQE-RLIFDLMALPNQAWENIVAQAAQ 675
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 280 VAQNAKCEGKTHETNSLDP----KKRNSLSFFIGMEVNSGKSVVDTIKTNTE 423
V + KC+ H+T L KKR+ + I + N K +V I TN++
Sbjct: 120 VLETYKCKQLNHQTTHLPTNTVLKKRSLFNDAISIVPNKKKQLVSAISTNSD 171
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 229 QVLSGLASLEECKWADKVAQN-AKCEGKTHETNSLDPKKRN 348
QV G +C+W D VA N ++ G T +SL P RN
Sbjct: 176 QVFVGSGRSIDCQWMDSVALNLSRYYGNTEALSSL-PLPRN 215
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +2
Query: 113 DKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPKT 292
+KE K P NF LN + + +L+ N S F S + S NGL S
Sbjct: 583 EKEETKAPTFNFSLNNASSTQDTTKPTLQFNFGSSFGKPTSNIFNDKKTSENGLASSTVA 642
Query: 293 PNAK 304
+K
Sbjct: 643 SESK 646
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 382 SGKSVVDTIKTNTEKMIAEITEKYGDLDEF 471
S K VVD +K +E E+ E+ LD F
Sbjct: 39 STKPVVDVLKVKSESSADELEERDAHLDRF 68
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 107 FPDKEPPKVPPRNFHLNLTKPEEKPPQKSLK 199
F D E + P N L KP EKP ++ ++
Sbjct: 161 FSDVEEDEFEPENTRKKLQKPIEKPKKEKIE 191
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 173 EKPPQKSLKPNARSIFKNYKSCPVSPVLRSA-NGLIKSPK 289
E PPQ SL + ++ + +CP V A +G + P+
Sbjct: 15 ENPPQSSLPTTSGIVYNMFPACPYPHVQNPAFHGSVDVPQ 54
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 8.2
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 286 QNAKCEGKTHETNSLDPKKRN-SLSFFIGMEVNSGKSVVDTIKTNTEKMIAEITEKYGDL 462
++ E +TH K+R S + F + K+V +N M I++K
Sbjct: 622 ESRSSENETHRFKKFYGKERELSNNEFPSRQT---KTVTSANSSNIRDMEHTISDKPRSE 678
Query: 463 DEFTPGDRSDLDLKPIEEKEXTETSPR 543
+ P +S KP EEK T+ R
Sbjct: 679 PDAIPSSKSMHSNKPFEEKSEKPTTKR 705
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 239 PVSPVLRSANGLIKSPKTPNAKEKLTR 319
P +P +RSA+ + SP+TP + K T+
Sbjct: 504 PSTPSVRSASRAMTSPRTPLPRVKNTQ 530
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 77 PVQSRVFNRLFPDKE 121
PVQ RV N +FP++E
Sbjct: 63 PVQQRVLNEVFPNEE 77
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 32 EQTQQKPSAFTVDTKPVQSRVFNRLFPDKE 121
+Q Q+P V TK + +V + LF DKE
Sbjct: 14 DQISQQPETDLVFTKRSECKVKDELFSDKE 43
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 8.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 214 HLQELQVLSGLASLEECKWAD 276
HLQE+ + + +C+W+D
Sbjct: 645 HLQEMHIFPQILETGKCRWSD 665
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 250 SLEECKWADKVAQNA 294
+L CKW D+V +NA
Sbjct: 152 ALRHCKWVDEVLENA 166
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 355 LKNSSFSDLKS*SREFFLRIWRFGRLYQ 272
LK + + S SRE +LR+WR L Q
Sbjct: 70 LKERNAQNTDSLSREDYLRLWRHDALMQ 97
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KSVVDTIKTNTEKMIAEITEKYGDLDEFTPGD 483
++V + + TN KM K +++EF PGD
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD 1196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,954
Number of Sequences: 5004
Number of extensions: 43308
Number of successful extensions: 191
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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