Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30624
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 32 0.39
01_06_1107 + 34568091-34568341,34568455-34568540,34569204-345692... 31 0.52
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617... 31 0.90
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652... 29 2.1
10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799 29 2.1
09_02_0369 - 8012470-8013120 29 2.7
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 29 3.6
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 28 4.8
11_06_0368 + 22756988-22758205 28 6.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 6.3
05_02_0147 + 7082180-7082223,7082459-7082872,7083061-7083151,708... 27 8.4
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 27 8.4
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 31.9 bits (69), Expect = 0.39
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Frame = +1
Query: 187 EVTKAKRQEHLQELQVLSGLASLE---ECKWADKVAQNAKCEGKTHETNSLDPKKRNSLS 357
E KRQE L + +GLA +E + A+K + K + K + + + K +N
Sbjct: 434 EAVALKRQEELIREEEAAGLAEIELKAKRSAAEKEKRIRKKQAKQKKNSRKNNKGKNEKV 493
Query: 358 FFIGMEVNSGKSVVDTIKTNTEKMIAEITEKYGDLDEFT--PGDRSDLDLKPIEEKEXTE 531
+ + S D I + EIT + +E + +R D + E +E
Sbjct: 494 DIKEIVIESSSPPDDRILDDLSSQAEEITSNADNPEEVSDISDNRDDSSELLHNDLEDSE 553
Query: 532 TSPRTRWKTAA*SKTRA 582
+SP W+T A S+T+A
Sbjct: 554 SSP-VNWETDA-SETQA 568
>01_06_1107 +
34568091-34568341,34568455-34568540,34569204-34569292,
34569406-34569530,34569825-34569901,34570210-34570862
Length = 426
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 107 FPDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARSIFK 223
+ D PP PP+ + T+PE +PPQ + P + S+ +
Sbjct: 242 YTDHLPPPPPPQPPSVCKTEPELEPPQPAAPPGSESLLR 280
>04_04_1357 +
32860677-32860781,32861484-32861588,32861678-32861728,
32861829-32861949,32862495-32862616,32863032-32863133,
32863226-32863300,32863391-32863470,32863601-32863751,
32863850-32864080,32864221-32864517,32864638-32864751,
32864857-32865030
Length = 575
Score = 30.7 bits (66), Expect = 0.90
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 337 KKRNSLSF---FIGMEVNSGKSVVDTIKTNTEKMIAE-ITEKYGDLDEFTPGDRSDLDLK 504
+K+ L F IG E+++ + D ++ + I + IT + PGD SDL+LK
Sbjct: 200 RKKKKLDFRLKVIGGEISAIPGISDALEDTIKNAIEDSITWPVRKVIPIIPGDYSDLELK 259
Query: 505 PI 510
P+
Sbjct: 260 PV 261
>11_01_0779 +
6518556-6518601,6519825-6519967,6520091-6520114,
6520140-6520286,6521957-6522142,6522232-6522490,
6522738-6522969,6523081-6523231,6523322-6523499,
6523916-6524191,6524414-6524642,6524754-6524904,
6525013-6525192
Length = 733
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +1
Query: 205 RQEHLQELQVLSGLASLEECKWADKVAQNAKCEGKTHETNSLDPKKRNSLSFFIGMEVNS 384
R++ L+ Q+ S SLEE D + Q +C DPKKR ++S I +
Sbjct: 398 RRKWLKSSQITSRYPSLEE----DDILQAKRCIESGLNCVETDPKKRPTISEIIVKLTDK 453
Query: 385 GKSVVDTIKTNTE 423
G V + N E
Sbjct: 454 GTEVKQGVLPNGE 466
>10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799
Length = 293
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 149 HLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPV 253
HL K E PP SL P+ N++ C SP+
Sbjct: 201 HLRGGKVRELPPPSSLTPSTAGELGNHRRCQSSPI 235
>09_02_0369 - 8012470-8013120
Length = 216
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 110 PDKEPPKVPPRNFHLNLTKPEEKPPQK 190
P EPP PP +F+ + PE PP++
Sbjct: 65 PPDEPPLKPPPSFYPAVLPPEPPPPRR 91
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 376 VNSGKSVVDTIKTNTEKMIAEI--TEKYGDLDEFTPGDRSDLDLKPIEEKEXTETS 537
+ G+SV D I+ NTE + E+ TE D + + +D E+ TE +
Sbjct: 363 IQEGQSVCDDIEVNTECQMVEVTKTEVLDDDESLEEQKKISIDAHTSEDSNLTEVA 418
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 44 QKPSAFTVDTKPVQSRVFNRLFPDKEPPKVPPRNFHLNLTKPEE---KPPQKS 193
QKPS + P Q P +PPK+ P N TKP KPP+K+
Sbjct: 95 QKPSKVSPPPPPPQKSAKVSPPPAAKPPKLSPPNL-AKATKPSRLAAKPPKKA 146
>11_06_0368 + 22756988-22758205
Length = 405
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 110 PDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARS 214
PDK+ P P+ KP+ KPP+ +PN RS
Sbjct: 6 PDKDKPLPKPKP-----PKPKPKPPKPEPEPNTRS 35
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +2
Query: 110 PDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK 289
P PP PP + + P PP P +S + + + P P N L+ SP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPP 603
Query: 290 TP 295
P
Sbjct: 604 PP 605
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/62 (29%), Positives = 23/62 (37%)
Frame = +2
Query: 110 PDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK 289
P PP +PP N P PP P RS + + P+ P L +A P
Sbjct: 690 PPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPA 749
Query: 290 TP 295
P
Sbjct: 750 PP 751
>05_02_0147 +
7082180-7082223,7082459-7082872,7083061-7083151,
7084230-7084487
Length = 268
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/60 (26%), Positives = 21/60 (35%)
Frame = +2
Query: 23 VFKEQTQQKPSAFTVDTKPVQSRVFNRLFPDKEPPKVPPRNFHLNLTKPEEKPPQKSLKP 202
V +Q Q P T P + + P PP P F L+ KPP + P
Sbjct: 188 VVLDQKQGNPPLMTAADMPDSLQRQSSFHPGSSPPPPEPGLFSLDAAVDNGKPPDDGVLP 247
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 164 KPEEKPPQKSLK---PNARSIFKNYKSCPVSPVLRSANGLIKSPKTPNAKEKLTRLTL 328
KP PP+ L+ P ARS + S P +PV + L+ S P +++ + L L
Sbjct: 10 KPGGLPPRAGLRLPLPRARSARVSLPSSPAAPVSLQSPLLLASRSGPTSRDAVVGLGL 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,342
Number of Sequences: 37544
Number of extensions: 291836
Number of successful extensions: 1048
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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