Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30624
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 32 0.26
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 32 0.26
L14710-3|AAA28081.1| 105|Caenorhabditis elegans Hypothetical pr... 31 0.46
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 31 0.46
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 29 2.4
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 29 2.4
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 29 2.4
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical pr... 28 4.3
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 28 4.3
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 28 4.3
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 28 4.3
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 28 4.3
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81095-3|CAB03159.2| 494|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical p... 27 7.5
AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical... 27 7.5
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ... 27 7.5
Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z70311-2|CAA94374.1| 366|Caenorhabditis elegans Hypothetical pr... 27 9.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 9.9
DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping... 27 9.9
AL034365-4|CAA22262.1| 375|Caenorhabditis elegans Hypothetical ... 27 9.9
AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical ... 27 9.9
AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical ... 27 9.9
AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic gl... 27 9.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 9.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 9.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 9.9
AC006637-6|AAM54177.1| 328|Caenorhabditis elegans Glutamate rec... 27 9.9
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 27 9.9
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 32.3 bits (70), Expect = 0.26
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 148 PPEPNETGGETSAEVTKAKRQEHLQE-LQVLSGLASLEECKWADKVAQNAKCEGKTHETN 324
P +P E+ + AEV KAK+Q+ + + L+ + +A+ + K+ A + KT E
Sbjct: 12968 PTKPAESEAQKIAEVNKAKKQKEVDDNLKREAEVAAKKIADEKLKIEAEANIK-KTAEVE 13026
Query: 325 SLDPKKRNSLSFFIGMEVNSGKSVVDTIKTNTEKMIAEITE 447
+ +K + EV S KS + ++ + I + E
Sbjct: 13027 AAKKQKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKKAAE 13067
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 32.3 bits (70), Expect = 0.26
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 148 PPEPNETGGETSAEVTKAKRQEHLQE-LQVLSGLASLEECKWADKVAQNAKCEGKTHETN 324
P +P E+ + AEV KAK+Q+ + + L+ + +A+ + K+ A + KT E
Sbjct: 12968 PTKPAESEAQKIAEVNKAKKQKEVDDNLKREAEVAAKKIADEKLKIEAEANIK-KTAEVE 13026
Query: 325 SLDPKKRNSLSFFIGMEVNSGKSVVDTIKTNTEKMIAEITE 447
+ +K + EV S KS + ++ + I + E
Sbjct: 13027 AAKKQKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKKAAE 13067
>L14710-3|AAA28081.1| 105|Caenorhabditis elegans Hypothetical
protein K02D10.3 protein.
Length = 105
Score = 31.5 bits (68), Expect = 0.46
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 128 KVPPRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK-TPNAK 304
K PP + +KP EKP + + KP ++ + K PV+ V + G+IK+ K TPN
Sbjct: 48 KKPPHVIRSDYSKPREKPAKVAKKPTVKN---DKKPKPVAIV--APTGIIKTFKTTPNPN 102
Query: 305 EKL 313
L
Sbjct: 103 RNL 105
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 31.5 bits (68), Expect = 0.46
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Frame = +1
Query: 154 EPNETGGETSAEVTKAKRQE--HLQELQVLSGLASLEECKWADKVAQNAKCEGKTHETNS 327
E N+ E S + +K +E HL++ + + E K+++ + E K ETN
Sbjct: 122 EKNKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKISKLTESEKKLKETNG 181
Query: 328 LDPKKRNSLSFFIGMEVNSGKSVVDTIKTNTEKMIAEITEKYGDLDEFTPGDRSD 492
K RN LS + K DT + ++ ++ K G L++ ++ +
Sbjct: 182 KVTKSRNQLSERVSELEAQLKREADTAQ-KPKQADPDLLNKVGRLNDLLTSEKQN 235
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 113 DKEPPKVPPRNFHLNLTKPEEKP-PQKSLKPNARSIFKNYKSCPVS 247
D EP +VP R NL PE+ P P LKPN + ++ +S PV+
Sbjct: 1167 DPEPLEVPERQVE-NLPSPEDTPRPSDPLKPNGTN--ESKESTPVT 1209
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 113 DKEPPKVPPRNFHLNLTKPEEKP-PQKSLKPNARSIFKNYKSCPVS 247
D EP +VP R NL PE+ P P LKPN + ++ +S PV+
Sbjct: 1167 DPEPLEVPERQVE-NLPSPEDTPRPSDPLKPNGTN--ESKESTPVT 1209
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/99 (24%), Positives = 40/99 (40%)
Frame = +1
Query: 172 GETSAEVTKAKRQEHLQELQVLSGLASLEECKWADKVAQNAKCEGKTHETNSLDPKKRNS 351
G+ +A + R+ +E+ L+ + K AQN K E + S K S
Sbjct: 57 GQGAASTIRDDREREKKEITELNDRLASYIGKVRFLAAQNRKLEADLNVLQSRFGKSTGS 116
Query: 352 LSFFIGMEVNSGKSVVDTIKTNTEKMIAEITEKYGDLDE 468
+ ME+ + +VV + E+ EI + LDE
Sbjct: 117 VKIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDE 155
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/99 (24%), Positives = 40/99 (40%)
Frame = +1
Query: 172 GETSAEVTKAKRQEHLQELQVLSGLASLEECKWADKVAQNAKCEGKTHETNSLDPKKRNS 351
G+ +A + R+ +E+ L+ + K AQN K E + S K S
Sbjct: 57 GQGAASTIRDDREREKKEITELNDRLASYIGKVRFLAAQNRKLEADLNVLQSRFGKSTGS 116
Query: 352 LSFFIGMEVNSGKSVVDTIKTNTEKMIAEITEKYGDLDE 468
+ ME+ + +VV + E+ EI + LDE
Sbjct: 117 VKIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDE 155
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/99 (24%), Positives = 40/99 (40%)
Frame = +1
Query: 172 GETSAEVTKAKRQEHLQELQVLSGLASLEECKWADKVAQNAKCEGKTHETNSLDPKKRNS 351
G+ +A + R+ +E+ L+ + K AQN K E + S K S
Sbjct: 57 GQGAASTIRDDREREKKEITELNDRLASYIGKVRFLAAQNRKLEADLNVLQSRFGKSTGS 116
Query: 352 LSFFIGMEVNSGKSVVDTIKTNTEKMIAEITEKYGDLDE 468
+ ME+ + +VV + E+ EI + LDE
Sbjct: 117 VKIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDE 155
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 116 KEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSP-VLRSAN 268
+ PP +PP++ N P Q P + SIF N P+ P RS+N
Sbjct: 1441 RAPPPLPPKSNRHNSNSPTLSSEQPFEDPMSPSIFVNTPPPPLPPKTYRSSN 1492
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 28.3 bits (60), Expect = 4.3
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Frame = +1
Query: 172 GETSAEVTKAKRQEHLQELQVLSG-LAS-LEECKWADKVAQNAKCEGKTHETNSLDPKKR 345
G+ +A + R+ +E+ L+ LAS +E+ ++ D AQN K + K
Sbjct: 57 GQNAASTIRDNREREKKEIMELNDRLASYIEKVRFLD--AQNRKLDADLKMLQGRFGKST 114
Query: 346 NSLSFFIGMEVNSGKSVV-DTIKTN--TEKMIAEITEKYGDL 462
S+ ME+ + +VV T K + TEK I ++ ++ +L
Sbjct: 115 GSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDEL 156
>Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical
protein T28F4.3 protein.
Length = 490
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 29 KEQTQQKPSAFTVDTKPVQSRV-FNRLFPDKEPPKVPPRNFHLNLTKPEEKPPQK 190
KE+ Q+K S T + K ++ + NR ++E P PPR L + + + P+K
Sbjct: 361 KEKEQEKESPATKEEKKKENGLKTNRQRDNREAPSKPPRKNPEELARSKLQGPRK 415
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 28.3 bits (60), Expect = 4.3
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Frame = +1
Query: 172 GETSAEVTKAKRQEHLQELQVLSG-LAS-LEECKWADKVAQNAKCEGKTHETNSLDPKKR 345
G+ +A + R+ +E+ L+ LAS +E+ ++ D AQN K + K
Sbjct: 57 GQNAASTIRDNREREKKEIMELNDRLASYIEKVRFLD--AQNRKLDADLKMLQGRFGKST 114
Query: 346 NSLSFFIGMEVNSGKSVV-DTIKTN--TEKMIAEITEKYGDL 462
S+ ME+ + +VV T K + TEK I ++ ++ +L
Sbjct: 115 GSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDEL 156
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
protein C37C3.6c protein.
Length = 1487
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 265 KWADKVAQNAKCEGKTHE 318
KWADKV KC+ K+++
Sbjct: 171 KWADKVVDGTKCDSKSND 188
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
protein C37C3.6a protein.
Length = 1558
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 265 KWADKVAQNAKCEGKTHE 318
KWADKV KC+ K+++
Sbjct: 171 KWADKVVDGTKCDSKSND 188
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
protein C37C3.6b protein.
Length = 2167
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 265 KWADKVAQNAKCEGKTHE 318
KWADKV KC+ K+++
Sbjct: 171 KWADKVVDGTKCDSKSND 188
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 28.3 bits (60), Expect = 4.3
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +1
Query: 193 TKAKRQEHL-QELQVLSGLASLEECKWAD--KVAQNAKCEGKTHETNSLDPKKRNSLSFF 363
T A R E L Q + +A E + +D K+ + A C KT+ +D KK + +
Sbjct: 1832 TLATRMERLDQTISDRIRIADGEISRHSDNEKICEQAACTLKTYHNVIVDVKKELEILYS 1891
Query: 364 IGMEVNSGKSVVDTIKTNTEKMIAEITEKYGDLDE 468
+ +E + KS+++ I ++ + + EK+ L E
Sbjct: 1892 LKLE-DQKKSLINLIDKVQKRGMIQDLEKWRSLME 1925
>Z81095-3|CAB03159.2| 494|Caenorhabditis elegans Hypothetical
protein F59F4.3 protein.
Length = 494
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 14 SKPVFKEQTQQKPSAFTVDTKPVQSRVFNRLFPDKEPPK 130
S+P F+E + V T+PV N+ P E PK
Sbjct: 194 SRPKFEEPDDDEDEVIEVVTEPVPETGSNKASPTSEQPK 232
>Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 464 SRSPYFSVISAIIFSVLVLIV-STTLFPLLTSMP-MKKLKE 348
SRS + SV S + SVLV IV S T+F S P ++KL E
Sbjct: 8 SRSSFPSVDSYLALSVLVAIVASVTVFTTFRSQPELQKLIE 48
>Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 464 SRSPYFSVISAIIFSVLVLIV-STTLFPLLTSMP-MKKLKE 348
SRS + SV S + SVLV IV S T+F S P ++KL E
Sbjct: 8 SRSSFPSVDSYLALSVLVAIVASVTVFTTFRSQPELQKLIE 48
>AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical
protein Y87G2A.20 protein.
Length = 197
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 169 GGETSAEVTKA-KRQEHLQELQVLSGLASLEECKWADKVAQNAKCEGKTHETNSLDPKKR 345
GG+ + TKA KR+ +++ + +E K ADK + K + + S D KK+
Sbjct: 26 GGKANKTKTKATKRKAQMKKKWTKTAQKKRKERKKADKAKKKTKKDAAKRKKKSKDKKKK 85
>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
protein F56H1.3 protein.
Length = 1174
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 376 VNSGKSVVDTIKTNTEKMIAEITEKYGDLDEFTPGDRSDLDLKPIEEKEXTE 531
++ GKS +D KT+++KM TE+ + G D PI + E
Sbjct: 1122 IHDGKSKLDVYKTDSDKMYTLFTEEEFIIFMLKRGINKDTSKNPIPVSKDDE 1173
>Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 29 KEQTQQKPSAFTVDTKPVQSRVFNRLFPDKEPPKVP 136
KE+ +++ A V + P S +F++LFP + PP VP
Sbjct: 384 KEKLRRR-KAEAVQSTP-SSSIFSQLFPAQPPPPVP 417
>Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 29 KEQTQQKPSAFTVDTKPVQSRVFNRLFPDKEPPKVP 136
KE+ +++ A V + P S +F++LFP + PP VP
Sbjct: 407 KEKLRRR-KAEAVQSTP-SSSIFSQLFPAQPPPPVP 440
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical protein
K07G5.1 protein.
Length = 998
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 110 PDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNARS 214
P PPK PR+ + +T P PP NA S
Sbjct: 951 PPLLPPKPEPRSRLIGMTSPTTPPPTADDDENANS 985
>Z70311-2|CAA94374.1| 366|Caenorhabditis elegans Hypothetical
protein T25B9.2 protein.
Length = 366
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 95 FNRLFPDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNAR 211
FN+ K P ++P +LT + P +K KP+AR
Sbjct: 211 FNQFSVFKRPLEIPDVGVLTDLTWADPDPTEKGYKPSAR 249
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 113 DKEPPKVP-PRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK 289
D++ K P P + K EEKP + K KS P SP + + + K
Sbjct: 1370 DRKKKKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKS-PASPTKKEKSPAAEEVK 1428
Query: 290 TPNAKEK 310
+P KEK
Sbjct: 1429 SPTKKEK 1435
>DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping
protein protein.
Length = 770
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 29 KEQTQQKPSAFTVDTKPVQSRVFNRLFPDKEPPKVP 136
KE+ +++ A V + P S +F++LFP + PP VP
Sbjct: 368 KEKLRRR-KAEAVQSTP-SSSIFSQLFPAQPPPPVP 401
>AL034365-4|CAA22262.1| 375|Caenorhabditis elegans Hypothetical
protein Y69E1A.4 protein.
Length = 375
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 95 FNRLFPDKEPPKVPPRNFHLNLTKPEEKPPQKSLKPNAR 211
FN+ K P ++P +LT + P +K KP+AR
Sbjct: 243 FNQFSVFKRPLEIPDVGVLTDLTWADPDPTEKGYKPSAR 281
>AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 29 KEQTQQKPSAFTVDTKPVQSRVFNRLFPDKEPPKVP 136
KE+ +++ A V + P S +F++LFP + PP VP
Sbjct: 384 KEKLRRR-KAEAVQSTP-SSSIFSQLFPAQPPPPVP 417
>AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 29 KEQTQQKPSAFTVDTKPVQSRVFNRLFPDKEPPKVP 136
KE+ +++ A V + P S +F++LFP + PP VP
Sbjct: 407 KEKLRRR-KAEAVQSTP-SSSIFSQLFPAQPPPPVP 440
>AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic
glutamate receptor GLR-6 protein.
Length = 396
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 215 IFKNYKSCPVSPVLRSANGL-IKSPKTPNAKEKLTRLTL*IRKRGIL*ASSSAW 373
+ +N V V+ +NG I PK +EKLTR L + ++GI+ + W
Sbjct: 297 VTQNCNLTRVGNVVLGSNGYSIALPKGSKWREKLTRQILDLNEKGIILMLKNNW 350
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 113 DKEPPKVP-PRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK 289
D++ K P P + K EEKP + K KS P SP + + + K
Sbjct: 1370 DRKKKKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKS-PASPTKKEKSPAAEEVK 1428
Query: 290 TPNAKEK 310
+P KEK
Sbjct: 1429 SPTKKEK 1435
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 113 DKEPPKVP-PRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK 289
D++ K P P + K EEKP + K KS P SP + + + K
Sbjct: 1370 DRKKKKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKS-PASPTKKEKSPAAEEVK 1428
Query: 290 TPNAKEK 310
+P KEK
Sbjct: 1429 SPTKKEK 1435
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 113 DKEPPKVP-PRNFHLNLTKPEEKPPQKSLKPNARSIFKNYKSCPVSPVLRSANGLIKSPK 289
D++ K P P + K EEKP + K KS P SP + + + K
Sbjct: 1370 DRKKKKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKS-PASPTKKEKSPAAEEVK 1428
Query: 290 TPNAKEK 310
+P KEK
Sbjct: 1429 SPTKKEK 1435
>AC006637-6|AAM54177.1| 328|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform b protein.
Length = 328
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 215 IFKNYKSCPVSPVLRSANGL-IKSPKTPNAKEKLTRLTL*IRKRGIL*ASSSAW 373
+ +N V V+ +NG I PK +EKLTR L + ++GI+ + W
Sbjct: 193 VTQNCNLTRVGNVVLGSNGYSIALPKGSKWREKLTRQILDLNEKGIILMLKNNW 246
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 215 IFKNYKSCPVSPVLRSANGL-IKSPKTPNAKEKLTRLTL*IRKRGIL*ASSSAW 373
+ +N V V+ +NG I PK +EKLTR L + ++GI+ + W
Sbjct: 709 VTQNCNLTRVGNVVLGSNGYSIALPKGSKWREKLTRQILDLNEKGIILMLKNNW 762
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,256,708
Number of Sequences: 27780
Number of extensions: 247807
Number of successful extensions: 1113
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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