Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30624
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +2

Query: 260 SANGLIKSPKTPNAKEKLTRLTL*IRKRGIL*ASSSAWKLTAGKVSLIQL 409
           S++ ++ SP+   A E +  +   +R   +   +   WK  A  +  +QL
Sbjct: 434 SSDSVLLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQL 483


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 119  EPPKVPPRNFHLN 157
            EPP  PPRN   N
Sbjct: 1858 EPPPPPPRNHDQN 1870


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 143 NFHLNLTKPEEKPP 184
           NF L    PE KPP
Sbjct: 59  NFQLKPYNPEHKPP 72


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 143 NFHLNLTKPEEKPP 184
           NF L    PE KPP
Sbjct: 60  NFQLKPYNPEHKPP 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,777
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)