Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30621
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    56   2e-09
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    24   8.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   8.7  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 40/77 (51%)
 Frame = +1

Query: 25  VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 204
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 205 KMKVNLRNHYKNKKYKP 255
             ++  R  YKNKKY P
Sbjct: 63  SNRLAAREAYKNKKYIP 79



 Score = 54.0 bits (124), Expect = 9e-09
 Identities = 26/43 (60%), Positives = 33/43 (76%)
 Frame = +3

Query: 255 LDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 383
           LDLR KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 80  LDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 237 KQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 353
           KQ ++A  +    +  +    + H AK+K R+ +R   L
Sbjct: 117 KQALRAKAIAESSSTKLESRKSAHNAKVKQRQRLRASGL 155


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 258 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 350
           D++ K  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,130
Number of Sequences: 5004
Number of extensions: 18622
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)