Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30621
(428 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35 pro... 86 4e-17
CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein. 86 4e-17
BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35 p... 86 4e-17
BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35 p... 86 4e-17
BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein. 86 4e-17
BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35 p... 86 4e-17
AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35 p... 86 4e-17
AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35 p... 69 9e-12
AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35 p... 53 5e-07
>U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +1
Query: 16 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 195
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 196 YHQKMKVNLRNHYKNKKYKP*I*EPRRPVLCARLLLNTKQRSRRGKRSER 345
+Q K NLR YK KKYKP P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +3
Query: 165 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 344
+KS L ++ + K + ++ + LDLR KKTRAMR+ L KHE +KT+K+ RK
Sbjct: 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110
Query: 345 KSLFPPRVYAVKA 383
+ L+P R YAVKA
Sbjct: 111 ERLYPLRKYAVKA 123
>CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein.
Length = 123
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +1
Query: 16 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 195
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 196 YHQKMKVNLRNHYKNKKYKP*I*EPRRPVLCARLLLNTKQRSRRGKRSER 345
+Q K NLR YK KKYKP P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +3
Query: 165 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 344
+KS L ++ + K + ++ + LDLR KKTRAMR+ L KHE +KT+K+ RK
Sbjct: 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110
Query: 345 KSLFPPRVYAVKA 383
+ L+P R YAVKA
Sbjct: 111 ERLYPLRKYAVKA 123
>BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +1
Query: 16 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 195
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 196 YHQKMKVNLRNHYKNKKYKP*I*EPRRPVLCARLLLNTKQRSRRGKRSER 345
+Q K NLR YK KKYKP P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +3
Query: 165 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 344
+KS L ++ + K + ++ + LDLR KKTRAMR+ L KHE +KT+K+ RK
Sbjct: 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110
Query: 345 KSLFPPRVYAVKA 383
+ L+P R YAVKA
Sbjct: 111 ERLYPLRKYAVKA 123
>BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +1
Query: 16 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 195
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 196 YHQKMKVNLRNHYKNKKYKP*I*EPRRPVLCARLLLNTKQRSRRGKRSER 345
+Q K NLR YK KKYKP P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +3
Query: 165 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 344
+KS L ++ + K + ++ + LDLR KKTRAMR+ L KHE +KT+K+ RK
Sbjct: 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110
Query: 345 KSLFPPRVYAVKA 383
+ L+P R YAVKA
Sbjct: 111 ERLYPLRKYAVKA 123
>BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein.
Length = 123
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +1
Query: 16 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 195
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 196 YHQKMKVNLRNHYKNKKYKP*I*EPRRPVLCARLLLNTKQRSRRGKRSER 345
+Q K NLR YK KKYKP P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/73 (42%), Positives = 46/73 (63%)
Frame = +3
Query: 165 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 344
+KS L ++ + K + ++ + LDLR KKTRAMR+ L KHE +KT+K+ RK
Sbjct: 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110
Query: 345 KSLFPPRVYAVKA 383
+ L+P R YAV+A
Sbjct: 111 ERLYPLRKYAVRA 123
>BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +1
Query: 16 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 195
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 196 YHQKMKVNLRNHYKNKKYKP*I*EPRRPVLCARLLLNTKQRSRRGKRSER 345
+Q K NLR YK KKYKP P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +3
Query: 165 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 344
+KS L ++ + K + ++ + LDLR KKTRAMR+ L KHE +KT+K+ RK
Sbjct: 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110
Query: 345 KSLFPPRVYAVKA 383
+ L+P R YAVKA
Sbjct: 111 ERLYPLRKYAVKA 123
>AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 86.2 bits (204), Expect = 4e-17
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +1
Query: 16 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 195
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 196 YHQKMKVNLRNHYKNKKYKP*I*EPRRPVLCARLLLNTKQRSRRGKRSER 345
+Q K NLR YK KKYKP P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 61.7 bits (143), Expect = 1e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +3
Query: 165 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 344
+KS L ++ + K + ++ + LDLR KKTRAMR+ L KHE +KT+K+ RK
Sbjct: 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110
Query: 345 KSLFPPRVYAVKA 383
+ L+P R YAVKA
Sbjct: 111 ERLYPLRKYAVKA 123
>AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35
protein.
Length = 95
Score = 68.5 bits (160), Expect = 9e-12
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +1
Query: 22 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 201
K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V +
Sbjct: 2 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 61
Query: 202 QKMKVNLRNHYK 237
Q K NLR YK
Sbjct: 62 QTQKENLRKFYK 73
>AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35
protein.
Length = 33
Score = 52.8 bits (121), Expect = 5e-07
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +1
Query: 106 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 204
LRVAKVTGG ASKLSKIRVVRK+IARV V +Q
Sbjct: 1 LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 33
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,167,154
Number of Sequences: 237096
Number of extensions: 629714
Number of successful extensions: 1677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -