Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30621
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.47 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.1  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   3.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 198 IHNVNTCDSFSYNTDLGQFRSNSTSNF 118
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 349 DFFLISFLVLIFASCLVRALRIARVFLALKSKA 251
           DF + S L   +  C++       +F AL+++A
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNRA 374


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 LETTTKTRNTSLRFKSQED 277
           L+TT+  +NT ++FK  E+
Sbjct: 52  LKTTSPFKNTEIKFKLGEE 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,308
Number of Sequences: 438
Number of extensions: 1254
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)