Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30620
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49830-2|AAV58878.1| 324|Caenorhabditis elegans Hypothetical pr... 28 5.1
U49830-1|AAK31483.1| 458|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY724773-1|AAU21473.1| 98|Caenorhabditis elegans UNC-89-D prot... 28 5.1
AY724772-1|AAU21472.1| 95|Caenorhabditis elegans UNC-89-C prot... 28 5.1
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein. 28 5.1
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated... 28 5.1
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated... 28 5.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 5.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 5.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 5.1
U41264-9|AAA82429.3| 240|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U49830-2|AAV58878.1| 324|Caenorhabditis elegans Hypothetical
protein C33F10.4b protein.
Length = 324
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 RDFLVSQIGEXFR-KTGGVLLTAWNTSWRLERRCTTKWLAARRTLPNHL 377
R + + I + F+ K +L+TAWN + R+ER+ + LPN L
Sbjct: 157 RTYQLGGIVKCFKVKLDPILVTAWNQAQRVERKNMETSFTSTIRLPNSL 205
>U49830-1|AAK31483.1| 458|Caenorhabditis elegans Hypothetical
protein C33F10.4a protein.
Length = 458
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 RDFLVSQIGEXFR-KTGGVLLTAWNTSWRLERRCTTKWLAARRTLPNHL 377
R + + I + F+ K +L+TAWN + R+ER+ + LPN L
Sbjct: 157 RTYQLGGIVKCFKVKLDPILVTAWNQAQRVERKNMETSFTSTIRLPNSL 205
>AY724773-1|AAU21473.1| 98|Caenorhabditis elegans UNC-89-D
protein.
Length = 98
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 19 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 54
>AY724772-1|AAU21472.1| 95|Caenorhabditis elegans UNC-89-C
protein.
Length = 95
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 16 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 51
>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
Length = 1338
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 52 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 87
>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
protein 89, isoform c protein.
Length = 1393
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 16 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 51
>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
protein 89, isoform d protein.
Length = 1396
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 19 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 54
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 6640 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 6675
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 6064 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 6099
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 460 LSSLAHPLSPLGQPLGIAVHRSDCVWVRRWFGKVLLAASH 341
LSSLAHP + +P G V+R C VR + ++LLA H
Sbjct: 6704 LSSLAHPGVEIAEPKG--VNRETC--VRVFVRQLLLALKH 6739
>U41264-9|AAA82429.3| 240|Caenorhabditis elegans Hypothetical
protein F10E7.2 protein.
Length = 240
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 314 EAGKKVYNKVASSKEDLTEPPSNPYAVRPMDSD 412
+ G+K Y A D + P NPYA P +D
Sbjct: 80 QPGQKPYAAAAYGGHDQAQQPQNPYAPPPPGAD 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,458
Number of Sequences: 27780
Number of extensions: 292003
Number of successful extensions: 755
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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