Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30619
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.9  

>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 246 FLLVPNIFN*FLLLSDFTRTDAHHF*TLP 160
           FL +P IF     L +FT    HH+ TLP
Sbjct: 18  FLSMPMIF---ATLGEFTDDQTHHYSTLP 43


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 133 EEPARNSVDICRMTLILHLSELNYNISFEV*SRLLKIKFYLLS 5
           EE  +NS  +C+  L   L EL     FEV S  +++ F  LS
Sbjct: 436 EELTQNSETLCKEKLKEKLEELFTGFEFEV-SEAVEVAFQKLS 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,330
Number of Sequences: 5004
Number of extensions: 26960
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)