Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30617
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    65   4e-11
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    64   1e-10
02_02_0470 - 10700092-10700505                                         30   2.0  
02_05_0398 - 28644632-28644889,28644997-28645032,28645101-286453...    29   3.5  
10_08_0951 - 21769342-21769752                                         29   4.7  
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    29   4.7  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +3

Query: 291 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 467
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 468 TGPFAFNSCPLRRILSA 518
           TGPF  N  P+RR+  A
Sbjct: 107 TGPFKINGVPIRRVNQA 123



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 476 FCIQFVPATPHPQRYVICTSTRISLGNFKLPKHFNDDYF 592
           F I  VP     Q YVI TST++ +   K+ K F+D YF
Sbjct: 110 FKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF 147


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
 Frame = +3

Query: 297 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 470
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 471 GPFAFNSCPLRRI 509
           GPF  N  P+RR+
Sbjct: 131 GPFKINGVPIRRV 143



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 476 FCIQFVPATPHPQRYVICTSTRISLGNFKLPKHFNDDYF 592
           F I  VP     Q YVI TST++ +    + K F+D YF
Sbjct: 133 FKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 170


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 372 LKIGTVCILLAGRHAGKRVVLVGILPSG 455
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>02_05_0398 -
           28644632-28644889,28644997-28645032,28645101-28645364,
           28645439-28645522,28645718-28645798,28645888-28645965,
           28646571-28646672,28646754-28646849,28646955-28647161,
           28647246-28647493,28647577-28647773,28647997-28648112
          Length = 588

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 561 NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKEKY 674
           NC N +  ++SR  ++    Q ++K  +TSLPQ+K+K+
Sbjct: 328 NCINQAPSLSSRNKKTLLQSQPSSK--VTSLPQQKQKF 363


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 372 LKIGTVCILLAGRHAGKRVVLVGILPSG 455
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
            40978941-40979434,40979516-40979609,40979686-40979779,
            40980342-40980444,40980550-40980601,40980716-40980756,
            40980881-40980960,40981490-40981936,40982378-40982554,
            40983205-40983803,40983886-40985040
          Length = 1227

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 534  PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKEKYVPSEQ 689
            PP   S   +  N    + S+   SAS + +  +  MTSLPQ      PS Q
Sbjct: 871  PPVASSVQQSFSNVVSSLPSQPYASASALPAQTRTNMTSLPQSMISVNPSTQ 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,387,819
Number of Sequences: 37544
Number of extensions: 405225
Number of successful extensions: 1078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)