Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30617
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 65 4e-11
Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 27 9.7
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 27 9.7
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.7
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 27 9.7
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 65.3 bits (152), Expect = 4e-11
Identities = 47/113 (41%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = +3
Query: 360 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRILSAM*SAPP 536
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI A A
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 537 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKEKYVPSEQRK 695
+ + + I + S Q K + S K +Y SEQRK
Sbjct: 127 LKVNVSGVKIPE---HINDEYFKRKSTAQKTGKNIFAS---GKTEYTVSEQRK 173
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 97 RNYDLGNGVMRFSKSKMFHKKAKYK 171
RN+DL GV+RFS S++ KK + K
Sbjct: 12 RNFDLSPGVLRFSASRLRLKKGEKK 36
>Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical
protein F15H9.1 protein.
Length = 426
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +3
Query: 501 RRILSAM*SAPPPEFHSATSNCQN-TSMMITSRRIRSASNVQSNAKRV-MTSLPQKKEKY 674
R I S + S P + +S TS+ QN T+ MI+S ++SN S+ V T+ P+++ +
Sbjct: 315 RMISSTIPSTPNLQINSTTSSIQNSTTSMISSTISSTSSNSTSSTINVPKTAAPEEEIEE 374
Query: 675 VPSEQR 692
PSE++
Sbjct: 375 GPSEEK 380
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 291 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 425
FYPT+ +A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 250 NGEPEQYPS-NVGSPSTPLRRKSVPHLVAVHSASMYAGSDPT 372
N +P +PS N P+ P RR+ P HS S + P+
Sbjct: 792 NPKPFSHPSANSKPPTPPNRRRHPPSASVAHSQSSFVDESPS 833
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 250 NGEPEQYPS-NVGSPSTPLRRKSVPHLVAVHSASMYAGSDPT 372
N +P +PS N P+ P RR+ P HS S + P+
Sbjct: 792 NPKPFSHPSANSKPPTPPNRRRHPPSASVAHSQSSFVDESPS 833
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 505 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 335
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,696
Number of Sequences: 27780
Number of extensions: 324817
Number of successful extensions: 820
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -