Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30614
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 142 2e-35
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.70
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 6.5
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 6.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 6.5
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 6.5
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 25 6.5
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 6.5
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 8.6
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 142 bits (345), Expect = 2e-35
Identities = 64/102 (62%), Positives = 82/102 (80%)
Frame = +2
Query: 203 KNRQTREHLLVFFTNQRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 382
K + E L + +I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48 KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106
Query: 383 NGHIGLGVKCSXEVATAIRGAIILAKLSVLPVRRGYWGNKIG 508
+GH+GLG+KC+ EVATAIRGAII+ KLS++P+RRGYWG +G
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALG 148
Score = 62.9 bits (146), Expect = 3e-11
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +3
Query: 144 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 254
++++KEWVPVTKLGRLV+ GKI +E IYL+SLPIKE
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 0.70
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 RAHDHGRDHDRVHEDRRGVYLHRVIRIRRENRHVHRLEQRPP 16
++HDHG H + H DR + R R++R ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 469 NRQLSKDNSASNGSGDFXAALHTQTNMTVVVANGNKCLETCALSG 335
+R LS + GSG L N+T+ +A+G T +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.0 bits (52), Expect = 6.5
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 257 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSXEVA- 427
E F G + E + ++P G TRF V D NG I G+ + E A
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437
Query: 428 TAIRGAIILAKLSVLPV 478
++ G L S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.5
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 499 VTPVTSSNW*NRQLSKDNSASNGSGDFXAALHTQTNMTVVVANGNKCLETCALSGTCLFL 320
VTP +SS+ + ++ +A + A+ HT N +V C+ + C+FL
Sbjct: 255 VTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMALCIFL 313
Query: 319 Y 317
Y
Sbjct: 314 Y 314
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 25.0 bits (52), Expect = 6.5
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 296 EVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSXEV-ATAIRG-AIILAKLSV 469
E+ +++PVQK AGQ F + D G K +V A ++G I+LA+L V
Sbjct: 123 EIDQVIPVQKILNAGQNLWFNEIILFEDELADNG---KSMFDVRARVVQGHLILLARLVV 179
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 182 RPSCSRRKNRQTREHLLVFFTNQRIEIIDFFLGPSLNDE 298
R +++NR+T + LV T +FF P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 433 GSGDFXAALHTQTNMTVVVANGNKCLETCA 344
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 255 SRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 362
SR+ I S+ +++ S R KH+P+ ++RH
Sbjct: 349 SRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,300
Number of Sequences: 5004
Number of extensions: 36931
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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