Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30612
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    48   7e-07
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    34   0.017
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    33   0.022
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    32   0.052
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    32   0.069
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    32   0.069
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    31   0.16 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   0.37 
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    29   0.48 
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    27   1.5  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    27   2.6  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    27   2.6  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    26   3.4  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    26   4.5  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    26   4.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   6.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   7.9  

>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = +2

Query: 350 GNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTS 481
           G S YA SK G+ + TKV    ++ + I+VNA+ PGYVDT M S
Sbjct: 147 GTSVYAASKAGLESFTKVLAAEVASKGIRVNAISPGYVDTPMLS 190


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 28  KYEGIDILINNAAIAFKQNATEPVAVQAEQTLY-VNFFSLTSTCEILFPIV--KNGGRVI 198
           ++  ID+LINNA +A   +    + +    T+   N   + +    + PI   KN G ++
Sbjct: 82  EFADIDVLINNAGLALGTDKVIDLNIDDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDIL 141

Query: 199 NVSSSAGHLSRI 234
           NV S AG  S +
Sbjct: 142 NVGSIAGRESYV 153


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 13  DYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQ---TLYVNFFSLTSTCEILFPIVKN 183
           D+   K   ID+L+NN  IA++Q A     +  EQ   T   N FS     +     +K+
Sbjct: 113 DFALKKLGWIDVLVNN--IAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKS 170

Query: 184 GGRVINVSSSAGHLSR 231
           G  ++N SS   ++ R
Sbjct: 171 GSSIVNCSSINAYVGR 186



 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 362 YAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTS 481
           Y  +K  +TA T+      +   I+VNAV PG + T + S
Sbjct: 192 YTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTPLVS 231


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 32.3 bits (70), Expect = 0.052
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +1

Query: 4   SFRDYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 183
           +F+D  K ++  +DI+INNA              +  + + VNF+ +    +    +++ 
Sbjct: 65  AFKD-AKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEALNLMRE 123

Query: 184 ---GGRVINVSSSAGH 222
              GGR++ +SS AG+
Sbjct: 124 SGKGGRILQISSVAGY 139


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 40  IDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVK--NGGRVINVSSS 213
           ID+L+NNA  +           Q       N F      + + PI +  + G +INVSS 
Sbjct: 43  IDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVIKAITPIFRSQHNGMIINVSSI 102

Query: 214 AGHLS 228
            G ++
Sbjct: 103 GGKMT 107


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 40  IDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVK--NGGRVINVSSS 213
           ID+L+NNA  +           Q       N F      + + PI +  + G +INVSS 
Sbjct: 43  IDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVIKAITPIFRSQHNGMIINVSSI 102

Query: 214 AGHLS 228
            G ++
Sbjct: 103 GGKMT 107


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 350 GNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTS 481
           G S+Y  SK  +    K     L+D      ++HPG V TDM +
Sbjct: 154 GFSAYGQSKAAINFTMKELSVELADEHFTFISIHPGVVKTDMNA 197


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 434 KVNAVHPGYVDTDMT 478
           +VN+V PGY+DTD+T
Sbjct: 186 RVNSVSPGYIDTDLT 200


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 359 SYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTSHK 487
           +Y  SK GV  L K    +   +  +VN V PGY  +DMT  K
Sbjct: 171 AYNTSKAGVIQLIK-SLAVEWRKFARVNCVSPGYTTSDMTGGK 212


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 320 CEXGIQAEEWGNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDM 475
           C  G++   +  S+Y  SK  +    K     L      V ++HPG V+TDM
Sbjct: 147 CMGGVRPNTY--SAYGQSKAALNYTMKEISFELEKDGFVVVSIHPGVVNTDM 196


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 40  IDILINNAAIA----FKQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKNGGRVINVS 207
           ID+LINNA +A    F+Q + E         L  N+ +       +    K GG ++N+ 
Sbjct: 74  IDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGK-GGSIVNIG 132

Query: 208 SSAGHL 225
           S  GH+
Sbjct: 133 SVNGHI 138



 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 350 GNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYV 463
           G+ +Y+ +K G+  LTK          I+VN   PG +
Sbjct: 141 GSPAYSAAKAGLENLTKALAVRYGPLGIRVNVCAPGTI 178


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 356 SSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTDMTSHK 487
           ++Y  SK  V  L K      ++   ++N+V PGY  TDM  ++
Sbjct: 170 AAYCASKAAVRQLCKALAVEWAEF-ARINSVSPGYFATDMPGYE 212


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 347 WGNSSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTD 472
           +  S Y  SK  +    K     L D    V ++HPG V TD
Sbjct: 153 FNQSGYGQSKAALNFTMKEISFELQDEGFIVISIHPGMVRTD 194


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 49  LINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN--GGRVINVSSSAGH 222
           LIN AAIA K +       + ++    N     +    LFP++       V+N++SS  +
Sbjct: 110 LINAAAIAPKNHLLSISRQELQKCFETNVIGQLAITSALFPLLLQDPNPHVVNIASSLAY 169

Query: 223 LS 228
            S
Sbjct: 170 FS 171


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 356 SSYAVSKVGVTALTKVQQRMLSDRDIKVNAVHPGYVDTD 472
           S+Y  SK  +    K     L D    V ++HPG V TD
Sbjct: 156 SAYGQSKAALNYTMKEISFELQDEGFIVISIHPGAVRTD 194


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 43  DILINNAAIAFKQNATEPVAVQAEQTLYVNF-FSLTSTCEILFPIVKNGGRVINVSSSA 216
           DI++N   I  K  ATEP+      +LY +F +++       +P++   GR   +  SA
Sbjct: 353 DIIMNYLLIPLKMLATEPIVFLV--SLYCSFVYAIIYLLLEAYPVIFQEGRHFPLGVSA 409


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 191 LPPFLTMGNSISQVDVNEKKLTYKVCSA*TATGSVAFCLNAMAAL 57
           +PP + +  S+  VD+ + +LT++  S   A G + F  N +A +
Sbjct: 576 VPPLIVVDRSVIPVDICDIRLTFQSMS---AMGHLTFLDNRIAVV 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,950
Number of Sequences: 5004
Number of extensions: 44203
Number of successful extensions: 141
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)