Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30612
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    33   0.002
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +1

Query: 13  DYIKTKYEGIDILINNAAIAFKQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVK---- 180
           ++++     IDILINNA I           +  ++   +N   LT   + +  ++K    
Sbjct: 76  EWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGI 135

Query: 181 NGGRVINVSSSAGHLSRIPSENLR 252
           N G ++N++ ++G L+ +P    R
Sbjct: 136 NNGIIVNINDASG-LNLLPMNRNR 158



 Score = 29.9 bits (64), Expect = 0.019
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 359 SYAVSKVGVTALTKVQQRMLS--DRDIKVNAVHPGYVDTDMTS 481
           +Y  SK  +T LT   +  L+  + +IKV ++ P  V+TDMT+
Sbjct: 160 AYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTA 202


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 46  ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 183
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 313 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 359


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 46  ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 183
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 46  ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 183
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 333 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 379


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 46  ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 183
           IL+ ++ I F  + NA  P  V    T  +NFF+ ++      P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 425 RDIKVNAVHPGYVDTDMTSHKGV 493
           RD+ V AV   Y DTD+     +
Sbjct: 93  RDVNVRAVVAQYYDTDVNKEYAI 115


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 197 ITLPPFLTMGN 165
           I+LPP L MGN
Sbjct: 172 ISLPPLLIMGN 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,536
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)