Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30611
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 116 7e-27
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 109 1e-24
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 104 3e-23
03_05_0830 + 28034179-28035492 29 1.4
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 4.3
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 5.7
07_03_1085 - 23851852-23853165 27 5.7
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 116 bits (279), Expect = 7e-27
Identities = 54/80 (67%), Positives = 65/80 (81%)
Frame = +3
Query: 27 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 206
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 207 EYYALLAKTGVHHYSGTTLN 266
EYYA+LAK VHH+ G ++
Sbjct: 61 EYYAMLAKVTVHHFHGNNVD 80
Score = 57.6 bits (133), Expect = 4e-09
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITT 346
+N++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 77 NNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 109 bits (261), Expect = 1e-24
Identities = 49/79 (62%), Positives = 60/79 (75%)
Frame = +3
Query: 30 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 209
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 210 YYALLAKTGVHHYSGTTLN 266
YYA+L K VHH+ G ++
Sbjct: 103 YYAMLGKVSVHHFHGNNVD 121
Score = 62.1 bits (144), Expect = 2e-10
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITTLP 352
+N++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 118 NNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 104 bits (249), Expect = 3e-23
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +3
Query: 48 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 227
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 228 KTGVHHYSGTTLN 266
K V+H++G ++
Sbjct: 186 KVSVYHFNGNNVD 198
Score = 61.3 bits (142), Expect = 3e-10
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 355
+N++LGTACGKYYRVC L++ DPGDSDI LPE
Sbjct: 195 NNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPE 228
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 96 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 179
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 78 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 191
L LV ++ + CL G K+ +K++R+G+ L IIA N P+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 30 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 185
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 96 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 179
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,042,496
Number of Sequences: 37544
Number of extensions: 177955
Number of successful extensions: 432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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