Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30610
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 135 6e-33
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 135 6e-33
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 135 6e-33
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 4.4
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 5.8
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.8
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 7.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.7
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 25 7.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 135 bits (326), Expect = 6e-33
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +3
Query: 255 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGFYTGQFVYCGKKATLEVGN 434
I+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG YTGQFVYCGK A L VGN
Sbjct: 40 IRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGN 99
Query: 435 VMPVGAMPEGTIVCNLEEKMGDRG 506
V+PVG MPEGTI+ N+EEK GDRG
Sbjct: 100 VLPVGEMPEGTIISNVEEKAGDRG 123
Score = 78.2 bits (184), Expect = 1e-15
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +2
Query: 506 SLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVXIVAXGGRIDK 664
+L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+V IVA GGRIDK
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDK 176
Score = 58.8 bits (136), Expect = 7e-10
Identities = 27/39 (69%), Positives = 34/39 (87%)
Frame = +1
Query: 136 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHG 252
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHG
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHG 38
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 135 bits (326), Expect = 6e-33
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +3
Query: 255 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGFYTGQFVYCGKKATLEVGN 434
I+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG YTGQFVYCGK A L VGN
Sbjct: 40 IRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGN 99
Query: 435 VMPVGAMPEGTIVCNLEEKMGDRG 506
V+PVG MPEGTI+ N+EEK GDRG
Sbjct: 100 VLPVGEMPEGTIISNVEEKAGDRG 123
Score = 78.2 bits (184), Expect = 1e-15
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +2
Query: 506 SLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVXIVAXGGRIDK 664
+L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+V IVA GGRIDK
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDK 176
Score = 58.8 bits (136), Expect = 7e-10
Identities = 27/39 (69%), Positives = 34/39 (87%)
Frame = +1
Query: 136 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHG 252
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHG
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHG 38
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 135 bits (326), Expect = 6e-33
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +3
Query: 255 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGFYTGQFVYCGKKATLEVGN 434
I+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG YTGQFVYCGK A L VGN
Sbjct: 40 IRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGN 99
Query: 435 VMPVGAMPEGTIVCNLEEKMGDRG 506
V+PVG MPEGTI+ N+EEK GDRG
Sbjct: 100 VLPVGEMPEGTIISNVEEKAGDRG 123
Score = 78.2 bits (184), Expect = 1e-15
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +2
Query: 506 SLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVXIVAXGGRIDK 664
+L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+V IVA GGRIDK
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDK 176
Score = 58.8 bits (136), Expect = 7e-10
Identities = 27/39 (69%), Positives = 34/39 (87%)
Frame = +1
Query: 136 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHG 252
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHG
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHG 38
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 461 LRHSSNRHHISNFKSCFLSTINKLACVEAFGSNEELLPCLELV 333
++H++ N CFL + L+ A SN + LELV
Sbjct: 143 MKHATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELV 185
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 624 PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARASDLYHPFSLQD 478
PLLLD + S +V +ASG+ P+ KF +DL F +
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNE 183
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 505 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 407
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 530 FATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVXIVAXGGRIDKT 667
FA++ P V++P+GA+K + S ++ G+I+ T
Sbjct: 541 FASLFKEEPSFAAGVVEMPAGAEKPVKPSKHNIMSFCILQGKIEVT 586
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 280 SMTLVEVHLWLLYTSAIHTSSRQGRSSSLLPKASTQANL 396
SMT + +++S+ H+SS + S SL P A + +L
Sbjct: 616 SMTTSHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTSL 654
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 422 KSCFLSTINKLACVEAFGSNEELLPCLELVWIA 324
K CF S I+ C++A G E+ +PC + W A
Sbjct: 28 KHCFQSYIDYFRCIKAKG--EDFVPCKQF-WHA 57
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 301 APLPGS-WIISL-TTPLIIHDVQRNLKSEV*ERLSSSSCEKRKLNRH 167
AP+ G W I L P I +++ K+E + SSS + LNRH
Sbjct: 400 APIKGGLWDIELFRAPTIQKPAEKDAKAERKKSGLSSSTSEESLNRH 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,649
Number of Sequences: 5004
Number of extensions: 57029
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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