Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30610
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      136   2e-32
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    30   1.5  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.6  
04_01_0618 - 8094991-8097288                                           29   3.4  
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817...    28   6.0  
02_05_0634 + 30513920-30514136,30514674-30514717,30515547-305155...    28   7.9  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  136 bits (329), Expect = 2e-32
 Identities = 56/84 (66%), Positives = 72/84 (85%)
 Frame = +3

Query: 255 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGFYTGQFVYCGKKATLEVGN 434
           +KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A EG YTGQFVYCG++ATL +GN
Sbjct: 41  LKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGN 100

Query: 435 VMPVGAMPEGTIVCNLEEKMGDRG 506
           V+P+ ++PEG +VCN+E  +GDRG
Sbjct: 101 VLPIRSVPEGAVVCNVEHHVGDRG 124



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +2

Query: 512 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVXIVAXGGRIDK 664
           ARASG++A VI HNPD   +R+KLPSGAKK++PSS R M+  VA GGR +K
Sbjct: 127 ARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEK 177



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +1

Query: 136 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHG 252
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+G
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNG 39


>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 132 YDPSLKDFIKSN*LNVGLSFSLYISYPVIKFKD 34
           YD  L D  K+  L + LS  +Y+  PVIKFKD
Sbjct: 366 YDCILDDETKNIFLPIHLSEEVYVGDPVIKFKD 398


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 520 LWKLRHCDWT 549
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 326 RSIQVQDKEGALHCSRRLLHRPICLLW 406
           R  Q+ D++  + C+ R+  +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460


>01_07_0219 +
           42079095-42079399,42079584-42079728,42081695-42081739,
           42082150-42082265,42082913-42083012,42083103-42083138,
           42083301-42083351,42083431-42083565
          Length = 310

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = -3

Query: 545 QSQWRSFQRHVPATSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEAFGS 366
           Q+ WR +Q+H      T+ ++++  +        R+ I+    CFL T+  +  V +  S
Sbjct: 150 QASWRLYQQHQGWLLETYLVWQLLLSAIFL--KRRYRINEITGCFLVTVGVIITVASGSS 207

Query: 365 NEELLPCLELVW 330
               L    ++W
Sbjct: 208 AGASLKGTGILW 219


>02_05_0634 +
           30513920-30514136,30514674-30514717,30515547-30515595,
           30515663-30515835
          Length = 160

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 116 KIL*NLINST*D*AFRYIFHIRL*NLKTVYFDLI 15
           K+  N++ S  +    YIFH  + NLK VY+ L+
Sbjct: 127 KLSINVLQSNTERPVYYIFHFLVHNLKAVYYGLV 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,895,552
Number of Sequences: 37544
Number of extensions: 371666
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)