Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30609
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 29 0.77
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 27 1.8
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 1.8
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 2.3
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 27 3.1
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 25 7.2
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.5
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 25 9.5
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 279 TKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 437
TKN S ++ + GA+++A RE Y A ++ + +A+ +L ++++N
Sbjct: 76 TKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTN 128
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 205 KAGSRYEPQAELGLSHVYDQL 267
KAGSRYE + G+SH D+L
Sbjct: 74 KAGSRYETKKFSGVSHFMDRL 94
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 351 DREFIYYTLEATQDKLNDALEILNNLVSNQEFRP 452
+RE YY L+ +KL++ + LN + ++ P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 536 KAAYRRGLGNSLFISXKRINDISSESLQ 619
K ++RRGL N + S KR+ D E ++
Sbjct: 1110 KESFRRGLNNRVKFSNKRVRDDYDEEME 1137
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 242 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 90
PN ACG+ R+ + + T ++ + +A N LDW + S + A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = -3
Query: 445 NSWFETKLFRISSASF---------NLSCVASKV*YMNSLSPEALTYAPI 323
N W ET +++I ASF +L + SKV Y+ +L+ E++ PI
Sbjct: 12 NWWRETSVYQIYPASFKDSNGDGFGDLEGIISKVDYLKALNVESIWLCPI 61
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 190 VTIAFKAGSRYEPQAELGLSHVYDQ 264
+++ AGSRY+P A G+SH+ ++
Sbjct: 45 LSVVINAGSRYQPDA--GVSHLLEK 67
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 518 AVDLLHKAAYRRGLGNSLFISXKRINDISSESLQLFASQ 634
A+ LH+ A+ RG+GN +++ IS ++ FAS+
Sbjct: 156 AMAKLHEKAFHRGIGNEVYLPASASPSIS--EIKDFASK 192
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 156 SCFRQRFPSYPRHNRLQ 206
SCF FP P+H RL+
Sbjct: 945 SCFVNAFPHIPQHRRLR 961
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 487 YFRRGALSLSSHGLNSWFETKLFRISSASFNLSCVASKV*YMNSLSPEAL 338
YF S++ H + F T + +++ SFN++ + S ++ SP L
Sbjct: 182 YFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNVTTIPSSA--VHYASPSGL 229
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 181 VTRVTIAFKAGSRYEPQAELGLSHVYDQLLD*QPRILVVSLFNANSLRL 327
V V+I ++Y+P+ + L +YDQ + LV L + N L
Sbjct: 172 VMEVSILELLNNKYDPEDKRHLIRLYDQFMHKNHLCLVFELLSINLYEL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,738
Number of Sequences: 5004
Number of extensions: 54529
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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