Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30608
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   110   1e-25
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   110   1e-25
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   3.4  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   4.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   5.9  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   7.8  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   7.8  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  110 bits (264), Expect = 1e-25
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IV+ L GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 41/58 (70%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 427
           GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 73  GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  110 bits (264), Expect = 1e-25
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IV+ L GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 41/58 (70%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 427
           GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 73  GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 228 VNLTGRLNKVVSFHLVLMFPSTILKDGLICS 320
           V+L  +   +  F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 410
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 332 FGYLVLTTSGGIMDHEEARRKHLGGKIL 415
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 180 IGEFEIVDDHRAGKIVVNLTGRLNKVVSFHL 272
           IGE  I+ D+RA  I++ + GR    V FH+
Sbjct: 535 IGELRILVDYRAQSIILPIFGR---PVPFHI 562


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 175 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 35
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,427
Number of Sequences: 5004
Number of extensions: 33377
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)