Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30607
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 61 7e-10
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.16
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 2.0
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 4.5
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 6.0
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 7.9
01_06_1118 - 34636919-34637031,34637032-34637082,34637250-346372... 28 7.9
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/79 (43%), Positives = 47/79 (59%)
Frame = +3
Query: 267 RLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQF 446
RL E F DKK + ++K Y+K L AKL+ ++ E FK N+ K +LG+ K+LQF
Sbjct: 75 RLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQF 130
Query: 447 FTGESMDCDGMVAMMEYRD 503
F GESM DG + Y+D
Sbjct: 131 FVGESMHDDGGLVFAYYKD 149
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Frame = +1
Query: 52 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 222
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 223 TDSAVESGVDM 255
D VD+
Sbjct: 60 VDDQAVKVVDI 70
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -3
Query: 494 FHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 360
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 291 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 464
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 465 D 467
+
Sbjct: 1195 E 1195
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 264 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 443
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 444 FFTGE 458
+ E
Sbjct: 237 VLSKE 241
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 366 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 268
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 157 TRAQGDIQIEGFNPSAEEADEGTDSAVES 243
TR+ +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855
>01_06_1118 -
34636919-34637031,34637032-34637082,34637250-34637287,
34637344-34637468,34637552-34637714,34638910-34639083,
34639161-34639426
Length = 309
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 285 RMFRLACGSGHVNSALDGRVRALVSLFSRRIKTLDLDITLCS 160
R+ L G+G +SAL R +++ SRR++ L L +L S
Sbjct: 13 RVLELGAGAGAASSALGFRDLCALAIASRRLRRLSLHPSLWS 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,562
Number of Sequences: 37544
Number of extensions: 316990
Number of successful extensions: 694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -