Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30607
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 80 2e-15
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 2.3
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.1
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.1
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.1
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 5.4
U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Frame = +1
Query: 52 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 225
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE D+G+
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGS 60
Query: 226 DSAVESGVDM 255
D VE G+D+
Sbjct: 61 DEHVERGIDI 70
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Frame = +3
Query: 255 VLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNMNKVMKDILG- 425
VLNH+LVE + D + Y+K +MK ++ +E+ D+ V+ FK + + +L
Sbjct: 71 VLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAK 130
Query: 426 -RFKELQFFTGESM---DCDGMVAMMEYRDFE 509
RFK L FF GE +G VA++EYRD +
Sbjct: 131 DRFKNLAFFIGERAAEGAENGQVAIIEYRDVD 162
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 404 FVHVCFKYFNLVRRLLFQFCY*FFHI 327
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 297 KKSYTLYLKDYMKKLVAKLEEK 362
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 297 KKSYTLYLKDYMKKLVAKLEEK 362
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 279 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 443
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 279 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 443
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 297 KKSYTLYLKDYMKKLVAKLEEK 362
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 294 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 437
+KK+ L L +K + K+EEKA K+ ++K +KD L R K+
Sbjct: 22 EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64
>U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical
protein F09F9.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 356 FQFCY*FFHIVFEVQCVGFLVTEGVCF 276
+Q C+ F H+ +GF GVCF
Sbjct: 53 YQTCFGFMHVKIATCSIGFFALLGVCF 79
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 133 YEVTGRLVTRAQGD-IQIEGFNP---SAEEADEGTDSAVESGVDM 255
YE T R T GD IQ +G P + E++DE D V+SG+ M
Sbjct: 186 YEQTLRRRTDEAGDGIQYDGTFPVVVTLEDSDEEKDEEVDSGIVM 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,651
Number of Sequences: 27780
Number of extensions: 287631
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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