Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30606
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    51   1e-07
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   1.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    28   1.4  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.3  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.3  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   5.8  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   5.8  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   7.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   7.7  

>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +2

Query: 347 PSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWXTALP 496
           P+   YGF +YL S     ++ +WA TP   L +F I+YY  ++W  A+P
Sbjct: 5   PTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIP 54


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 335 PAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQK 475
           PA T S  LY FF  L S+     + +W + P S +H+  +Y  P+K
Sbjct: 690 PALT-SEWLY-FFDQLHSQCYKGNYELWRYIPYSIIHFHYLYATPEK 734


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 329 HTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNI 457
           HT A T    + GF L+L S+T L     WAF   S    F +
Sbjct: 81  HTKAVTKGLKI-GFMLFLISETFLFASIFWAFFHSSLSPTFEL 122


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 645  EEKVLTICFTCKIRKLILKSVWTINMWSK 559
            E K+L +CF+C I   ++     IN W +
Sbjct: 936  EGKMLAVCFSCLIFNELIMVALQINTWEQ 964


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 341 PTPSRSLYGFFLY-LFSKTTLTMFCIWAFTPDSFLHY 448
           PT    LYG  L  L SKTT ++  I A+ P   +HY
Sbjct: 122 PTLENILYGSNLSSLLSKTTHSILDILAWVPYGVMHY 158


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 177 LYVHHFLLIPCQHLVHR 127
           L+   F+L PCQH  HR
Sbjct: 844 LFSEPFVLFPCQHAFHR 860


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 417 GLLHQIVFYIILTFITIHKNTGPQHYQYNFCSI 515
           GLL +   Y I+T++T+H +    H  +NF S+
Sbjct: 46  GLLQKRQLYEIITYVTLHLSM--LHIVFNFVSL 76


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 221 LRFKTPKSSCESILKNILLITKTVENLATK*PAMPEHTPAPTPSRSLYG 367
           LR + P+   +  +K+   I  + E+L+ K PA+    P+ + SRS +G
Sbjct: 524 LRDQEPQRGDKGDIKSA--INNSTEDLSKKHPALHSSRPSDSRSRSKFG 570


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = +2

Query: 242 SSCESILKNILL-ITKTVENLATK 310
           ++CESILK+ LL + KT E+L+++
Sbjct: 244 AACESILKDYLLNLVKTSESLSSQ 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,121
Number of Sequences: 5004
Number of extensions: 60598
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)