Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30606
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760 44 1e-04
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 42 3e-04
08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510... 42 6e-04
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703... 42 6e-04
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 31 0.64
01_03_0248 + 14235808-14235989,14236538-14236635,14237171-142372... 31 0.64
01_01_0931 - 7351306-7351371,7351620-7351772,7352343-7352484,735... 29 2.6
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 28 7.9
>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
Length = 184
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 359 LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWXTALP 496
+YGF + + T++ +WA+ P+ L I YYP +YW A+P
Sbjct: 53 VYGFVGSITTVIATTVYLVWAYMPERCLRSLGITYYPSRYWALAVP 98
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 335 PAPTPSRS---LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWXTALP 496
P PSR YGF + + + WA+ P+ +L + + YYP ++W A+P
Sbjct: 757 PTADPSRGSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWALAMP 813
>08_02_1388 +
26649874-26649905,26650243-26650365,26650980-26651013,
26651792-26651893,26652174-26652241,26652518-26652571,
26653139-26653211,26653428-26653537,26653615-26653719,
26653842-26653941,26653979-26654088,26656234-26656306,
26656429-26656484,26656576-26656702
Length = 388
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +3
Query: 75 QKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVN 254
Q + + S + AS+VY L VDKEL+ V RE + L + F++++ + LR + +
Sbjct: 303 QSDFEIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFS 362
Query: 255 RS*KIYFLSQKL 290
+ L KL
Sbjct: 363 AFVDLTVLVTKL 374
>02_02_0595 +
11968298-11968329,11969405-11969438,11970216-11970317,
11970598-11970665,11970942-11970995,11971563-11971635,
11971852-11971961,11972039-11972143,11972266-11972365,
11972403-11972512,11974664-11974736,11974859-11974914,
11975006-11975132
Length = 347
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +3
Query: 75 QKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVN 254
Q + + S + AS+VY L VDKEL+ V RE + L + F++++ + LR + +
Sbjct: 262 QSDFEIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFS 321
Query: 255 RS*KIYFLSQKL 290
+ L KL
Sbjct: 322 AFVDLTVLVTKL 333
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 63 QYYLQKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKS 194
Q + T + FT SL Y+V + KEL+ REF LKS
Sbjct: 84 QKLIDATARLEFTHKQCGSLQYEVRILQKELEIRNKEREFDLKS 127
>01_03_0248 +
14235808-14235989,14236538-14236635,14237171-14237204,
14237731-14237900,14238060-14238240,14238288-14238498,
14239122-14239233,14239360-14239487,14240201-14240263
Length = 392
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 66 YYLQKTLKFSFTSNDNASLVYDVLNVDKELKGSGVH 173
Y+L++ +F T N N S + V+N +KG+G+H
Sbjct: 131 YFLKELYRFEDTDNPNKSAIPLVINTSGWVKGTGLH 166
>01_01_0931 -
7351306-7351371,7351620-7351772,7352343-7352484,
7352604-7352791,7353117-7353179,7353541-7353585,
7353658-7353792,7354515-7354623,7355032-7355084,
7355168-7355317,7355714-7355722,7356161-7356577
Length = 509
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 663 DQYNPFEEKVLTICFTCKIRKLILKSVWTINMWSK 559
D +PF E L++C + R L L +W ++M+ K
Sbjct: 299 DIKDPFTECYLSLCIALRNRNLKLVKLWKVSMFKK 333
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 266 NILLITKTVENLATK*PAMPEHTPAPTP 349
++ +I + V ++ T+ P+HTP PTP
Sbjct: 579 DLAMINRAVHSVETRPYERPKHTPKPTP 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,574
Number of Sequences: 37544
Number of extensions: 322726
Number of successful extensions: 774
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -