Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30606
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    62   5e-10
Z34801-5|CAA84326.1|  123|Caenorhabditis elegans Hypothetical pr...    35   0.047
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    30   1.8  
AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF016415-9|AAW88416.1|  297|Caenorhabditis elegans Serpentine re...    28   7.1  
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/64 (42%), Positives = 35/64 (54%)
 Frame = +2

Query: 314 PAMPEHTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWXTAL 493
           P+   H P P P+R +YGF LY+ S T   ++ IWA TP   L+   I Y P K W  A+
Sbjct: 19  PSEEIHLPGPHPARGIYGFALYIVSWTLFVIYLIWAITPVPILYRLGITYIPSKLWALAI 78

Query: 494 PIQF 505
            I F
Sbjct: 79  GIFF 82


>Z34801-5|CAA84326.1|  123|Caenorhabditis elegans Hypothetical
           protein F59A2.5 protein.
          Length = 123

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 66  YYLQKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRV 245
           Y    +++ S  + + A  V DV+ +DKE + SG  RE   +   + I+ +S D K L  
Sbjct: 24  YIHSASVRLSVGTEEAARTVADVIKIDKEPRRSGARREVCSEGEFVVIKIESKDPKSLSK 83

Query: 246 AVNRS*KIYFLSQKLWK 296
           ++  +  +  LS K  K
Sbjct: 84  SIANAVDMIDLSVKTIK 100


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 351 QDLYMASFCTYLAKQP*QCFVFGLLHQIVFYIILTFITIHKN 476
           +++++  FC Y    P  C VFG      FY   +F TIHK+
Sbjct: 140 EEIWLFKFCDYKLDIPSNCKVFGCAVNSCFY---SFWTIHKS 178


>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 349 WCRCWCVFRHCWLF 308
           +CRC CV+R  WLF
Sbjct: 14  FCRCLCVYRCLWLF 27


>AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical
           protein F54A3.4 protein.
          Length = 755

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 15  LCFPTVKSRAKTI------KS*QYYLQKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHR 176
           +C PT+K+  KTI      ++ Q    K LK  F    +  +  + LN+   L+    HR
Sbjct: 1   MCLPTIKA-FKTILDAGSHRATQLVPLKKLKAEFQLKSDIYVKLEYLNISGSLEDRAAHR 59

Query: 177 EFQLKSNV 200
            F++ + +
Sbjct: 60  AFEMSNGI 67


>AF016415-9|AAW88416.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 36 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 351 QDLYMASFCTYLAKQP*QCFVFGLLHQIVFYIILTFITIHKN 476
           ++L +  FC+Y  + P  C VFG      FY    F TIH++
Sbjct: 140 EELTLFGFCSYDMEIPSTCRVFGCAMNKCFY---NFWTIHRS 178


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 72  LQKTLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAV 251
           L  TL+     N N+SL  DVL     ++  GVH +   K+ + +++  S  L+ L  +V
Sbjct: 528 LVDTLECLKNKNFNSSLASDVLKFGSNIRAFGVHAKND-KATISFLDLIS-KLQNLYFSV 585

Query: 252 NRS 260
            +S
Sbjct: 586 KKS 588


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,568
Number of Sequences: 27780
Number of extensions: 331734
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)